KEGG   Branchiostoma floridae (Florida lancelet): BRAFLDRAFT_226629Help
Entry
BRAFLDRAFT_226629 CDS       T01074                                 

Definition
hypothetical protein
Orthology
K05635  
laminin, gamma 1
Organism
bfo  Branchiostoma floridae (Florida lancelet)
Pathway
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:bfo00001]
 Environmental Information Processing
  Signaling molecules and interaction
   04512 ECM-receptor interaction
    BRAFLDRAFT_226629
Cell adhesion molecules and their ligands [BR:bfo04516]
 1. Immunoglobulin Superfamily
  Neural system
   Enzymatic CD
    PTPRF, LAR; receptor-type tyrosine-protein phosphatase F [KO:K05695]
     Laminin-1 Extracellular matrix (ECM) components
      BRAFLDRAFT_226629
 2. Integrin Family
  Beta1 integrins
   VLA-1
    ITGB1; integrin beta 1 [KO:K05719]
      BRAFLDRAFT_226629
     Laminin-2 Extracellular matrix (ECM) components
      BRAFLDRAFT_226629
   VLA-2
     Laminin-1 Extracellular matrix (ECM) components
      BRAFLDRAFT_226629
   VLA-3
      BRAFLDRAFT_226629
     Laminin-10 Extracellular matrix (ECM) components
      BRAFLDRAFT_226629
     Laminin-11 Extracellular matrix (ECM) components
      BRAFLDRAFT_226629
   VLA-6
     Laminin-1 Extracellular matrix (ECM) components
      BRAFLDRAFT_226629
     Laminin-8 Extracellular matrix (ECM) components
      BRAFLDRAFT_226629
   VLA-7
     Laminin-1 Extracellular matrix (ECM) components
      BRAFLDRAFT_226629
  Beta4 integrins
   alpha 6 beta 4
    ITGB4; integrin beta 4 [KO:K06525]
     Laminin-1 Extracellular matrix (ECM) components
      BRAFLDRAFT_226629
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
AA seq 1572 aa AA seqDB search
MGECVDRQGRAQRCMPEFENAAFNKLVVATNTCGDPPIEYCLQTGVTGVTKSCHMCDSSN
PRLTHPPRYLTDFNNDDNTTWWQSETMLQGVQYPNEVNITLSLGKSFDITYVRLKFHTSR
PESFAIYKRTTEDGEWIPYQYYSGSCRSTFQKINRGVITNRDETEAICTDEFSDISPLTG
GNVAFSTLEGRPSAYNFDNSLTLQDFVTATDIRVTLNRINSFGDEVFRDPKVLKSYYYAI
SDFAVGGRCKCNGHAASCEANVNTGGGGARLICVCEHNTAGVDCDRCLPMFNDRPWGRAT
ASDSHECQACNCNNLADSCEFDSDLYRRTGHGGRCIGCRQNTAGPNCERCLEYYYRAQQS
DPCQPCNCNPLGSIQQQCDPLGRCQCKPGVGGDKCDRCQDGHFGLSEAGCRQCSCDSAGT
VNNAGACDQVTGQCQCKQNVEGPRCDRCKPGYFNLDSTNPSGCISCFCYGHSAKCAVASG
YAASVISTPFTTGQRGWTGEDRFGNEREIRWTQVGENLGATADSQEPIYFVAPAEYLGNQ
RLSYGQTLTFKLRVDPEDVRLSAEDIVLEGNGIRLSAAMTAQQNPMPRRVNQEYSFRLHE
DPSLGWNQRLTSFDFNRLLSNLTSVKIRGTYTDRGRGFLDDVRLNTAVRSGAQPAASWVE
VCECPEGLTGQFCEQVVPGYKQENPQLGPFSPVEQCFCNGHSASCDTVTGECSCQHNTEG
IYCERCLKGYYGDATQGTPNDCQPCPCPNQAPCDLAPNGEVVCTSCTEGYIGDRCERCMD
GYYGDPIGQYGQPRPCQRCICSGNIDENAVGNCNSITGECLKCVYFTTGTACERCLPGYY
GDATSFPKPPCKPCNCYQFGTQAGGECDQNTGQCPCLSNVVGLQCDRCVDGYWNINSGSG
CEVCDCDTTGSLDTSCELNSGQCQCKPGVGGRRCEKCLANHYGFSTSGCTACDCDPRGSL
SLQCDEFGSCPCREGVVGDKCDACKENYYDVARGCIECPACYGLVQDKVDDHREKLRQLR
DLINNVGVNPDLINDQKFEERLKQVEELAKDLLNEARKAAALDALRDKVNEIEKAKNNAQ
ATTNDAKVKVQDADETIRRIQDKLREANNYLGNEGKQALDEAEQAAANFGQGSREMQELA
EQAKALANDQTEDAQAIEDTANQALQTSKDALKAVRDALAGQGDIANKRIPDLERKLQDA
EEQLDKVNREAADALANAEASADRATKILANAQARQPNIDVDDLKRQTAAIKDEAENSLL
PDLAKLEADNRQTVNDINDNYDAAEQLLKDAQDKQDVIDQLLARADAANDKAEQAEEKGR
ETLGEAQKTLEYLSNFEAKVQESKAKADEALGKEAEIRRIIDEAVSTTDQAEAALGSADS
DARTAKKTAEQAKQIAEGAAADAKQVKEDAATIYDQATAVNNNADELKGDVDSAENTFNQ
KKRQADDDETRVNAAMDAANEAQRKADVAMAKVQGTLDRVNKILEQLDQIDPPDAGKLTE
LQKEYDDLKAELDALRINQLMLNIQRLMTEQENTVTNFEAELDTLKKEVANLEDISRSLP
DGCFKQEGLEDT
NT seq 4719 nt NT seq  +upstreamnt  +downstreamnt
atgggcgagtgtgtggacaggcagggtcgggctcagcgctgcatgcctgagttcgagaat
gcggccttcaacaaactggtggtggccaccaacacttgcggagaccctccgatagagtac
tgtctgcagaccggcgtgaccggagtcaccaagtcctgccacatgtgcgactccagcaac
ccgcgcctcacccatcctcccagatacctcaccgacttcaacaacgacgacaacacgacc
tggtggcagtcggaaaccatgctgcaaggagttcagtatcccaacgaggtcaacatcacg
ctctccctaggaaaatcctttgacatcacatacgtcagactaaagttccacacgagtcgg
ccggagagtttcgccatctacaagcggacgacggaagatggggagtggatcccgtaccag
tactacagcgggtcctgtagatcaaccttccagaaaatcaacagaggagtcatcaccaac
agagacgagacagaagccatttgtacagacgagtttagtgatatctcccctctgactggt
gggaatgtggcctttagtacactggagggcagaccaagtgcctacaacttcgacaacagc
cttaccttacaagattttgttacagcaacagacatcagagtaacgctcaacaggatcaac
agttttggagatgaagttttcagggaccccaaagttcttaagtcatactactatgcaatc
tccgattttgctgtgggcggcaggtgtaagtgtaacggtcatgctgcgtcctgcgaggcc
aacgtgaacaccggtggcggcggcgcacggctcatctgcgtgtgtgaacacaacacggcc
ggcgtggactgtgacaggtgtctgcccatgttcaacgacagaccgtggggaagagcgacc
gcatctgattctcatgagtgtcaagcctgcaactgtaacaacctggcagacagctgcgag
tttgactcggacctgtacagacggacagggcacggcgggcgctgcatcggatgcagacag
aacactgctggacctaactgcgagcgctgtctggagtactactacagggcacagcagagc
gacccctgtcagccttgtaactgtaaccctctaggatcgatccaacagcagtgtgacccc
ctgggacgctgtcagtgtaaacccggggtgggaggggacaagtgtgaccgctgccaggat
ggacacttcggcctgagcgaggctggctgcagacaatgttcctgcgacagtgctgggact
gtgaacaatgctggagcctgtgaccaggtgacgggacagtgccagtgtaagcagaatgtg
gagggacctcgctgtgacaggtgtaagcctggttacttcaatctggactccaccaaccct
tctggctgtatctcctgcttctgttacggccactctgccaagtgtgccgtggcctcggga
tacgcagcctcggtcatcagtacacccttcactacaggtcagcgtggctggaccggtgag
gacaggtttggcaatgagagggagatcaggtggacacaggtgggggagaacctgggagcg
acagctgacagccaggaacctatctactttgtggcaccagctgagtaccttggaaatcag
cgcctgagctacggccagactctgaccttcaagcttcgtgtggaccccgaggacgtgcgc
ctgtcagcagaagacatcgtgctggaggggaacgggatccgcctgtccgcggccatgact
gcccaacagaaccccatgcccaggagggtcaaccaggaatactcgttccgcctgcatgag
gacccgtccctggggtggaaccagaggctgacttcatttgacttcaaccgactcctcagt
aacctgacttctgtcaagatccgtggaacctacactgacagaggtcgtggtttccttgac
gatgtgaggctgaacacagcagtgaggagcggggctcagcctgctgccagctgggtggag
gtgtgcgaatgtcccgaaggtctgaccggacagttctgtgaacaggtggttcctggatac
aagcaggagaacccccagctgggccccttctctcccgtggaacagtgcttctgtaacggc
cactctgccagctgtgacaccgtcacaggtgaatgtagctgtcagcacaacacagaggga
atctactgcgagcgttgtctgaagggttactatggcgacgccacccagggaacacccaac
gactgtcagccctgcccctgccccaaccaggctccgtgtgatctcgctcctaacggggag
gtagtctgtacctcctgtactgaggggtacataggtgatcgttgtgagagatgtatggac
ggttactatggcgaccccatcggtcagtacggacagccacgcccctgccagcgctgcatc
tgtagcggaaacattgatgagaacgctgtcggaaactgcaactcaatcactggcgagtgt
ttgaagtgcgtgtacttcacgacgggaacggcctgcgaacgctgccttcccggctactac
ggcgacgccacatctttccccaagcctccatgcaaaccatgcaactgttaccagtttggc
acccaggctggaggagagtgtgaccagaacacaggacagtgcccctgtctctccaacgtg
gtgggcctacaatgtgaccgttgtgtggatggttactggaacatcaacagtggatcaggc
tgtgaggtgtgcgactgtgacaccactggttcgctggacaccagctgtgagctcaacagt
gggcagtgccagtgtaaaccaggagtgggcgggcggcgctgtgagaagtgcctggccaac
cactacggattctcaacttctggctgtaccgcctgtgactgtgaccctcgcggctccctc
agcctccagtgtgatgagttcggaagctgcccatgcagggagggtgtggtcggagacaag
tgtgatgcttgtaaggagaactactacgatgtagctcgtggttgcatcgagtgtccagct
tgctatggcctggttcaggacaaagtggacgatcatcgcgagaaacttcgccagctgcgt
gacctcatcaacaatgttggggtgaaccctgacctcatcaacgaccagaagtttgaggag
cggctgaagcaggtggaggaactggccaaggatcttctgaacgaggcacgcaaagcagct
gccctggatgctctacgtgacaaggtcaacgagattgagaaggccaagaacaacgcccag
gccaccaccaacgatgccaaggtcaaggtgcaggatgctgacgagactatccgacgtatc
caggacaaactgagggaggcaaacaactacctgggcaatgagggtaaacaagctctggat
gaagccgagcaggcagcagctaactttggccagggctccagggagatgcaggagctggca
gagcaggccaaggcactggcaaacgatcaaactgaggatgcccaggctattgaggacact
gccaaccaggctctgcagacctccaaggatgccctgaaggctgtcagggacgctctggct
ggacaaggggacatcgccaacaagagaatacctgacctggagaggaagctgcaagatgca
gaagaacagctggacaaggtgaaccgggaggcggccgatgctctcgccaacgcagaagcc
agcgccgaccgtgccaccaagatcctcgccaacgctcaggcccgtcagcccaacatcgac
gtggatgacctgaagcgccagacggccgccattaaggacgaggcggagaactcgctgctg
cccgacctggccaagctggaggcagacaacaggcagactgtcaacgacatcaacgacaac
tatgatgcagctgaacagctgctgaaggatgcccaggataaacaggatgtaatcgaccag
ttgctggcccgtgctgatgctgctaatgacaaggcagagcaggctgaggagaagggtcgg
gagacgctgggagaggctcagaaaactctggagtacctcagcaactttgaagccaaggtg
caggagagtaaagccaaggctgacgaggccctgggtaaggaggctgagatcaggaggatc
atcgacgaggccgtcagcaccacagaccaggccgaggctgccctggggtcggctgacagc
gatgcaaggacggccaagaaaactgccgagcaggccaaacagatagccgagggagctgct
gctgatgccaaacaggttaaggaagatgctgccacgatctacgaccaggccacggccgtc
aacaacaacgcagatgagctcaaaggagacgtggacagcgccgagaacaccttcaaccag
aagaagagacaggccgacgacgatgagacaagagtcaatgctgccatggatgctgctaac
gaagcccagaggaaagcagatgtggccatggccaaggtgcagggtacactggacagagtc
aacaagattctggagcaactggatcaaattgacccccctgatgcaggcaaactgacagaa
ctacagaaggagtatgacgacctaaaggccgagctggacgcactacggatcaaccaactc
atgctcaacatccaacgactcatgacagaacaggaaaacaccgtcaccaacttcgaggcc
gagttagacaccctgaagaaagaagtggccaatctggaggacatcagccgctcgcttccc
gatggctgctttaaacaggagggtctggaggacacgtaa

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