KEGG   Bacteroides fragilis YCH46: BF3213
Entry
BF3213            CDS       T00202                                 
Name
(GenBank) transcription termination factor rho
  KO
K03628  transcription termination factor Rho
Organism
bfr  Bacteroides fragilis YCH46
Pathway
bfr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bfr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BF3213
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bfr03021]
    BF3213
   03019 Messenger RNA biogenesis [BR:bfr03019]
    BF3213
Transcription machinery [BR:bfr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BF3213
Messenger RNA biogenesis [BR:bfr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BF3213
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA OB_RNB AAA_25 Mor AAA_22 AAA_16
Other DBs
NCBI-ProteinID: BAD49958
UniProt: Q64RC3
Position
3640914..3642977
AA seq 687 aa
MYNIIQLNDKNLSELQAIAQELGIKKTDSLKKEELVYKILDEQAIAGATKKVAADKLKEE
RKEDKKKRSRVTVKKENADKVFSSTKNGELTKTDAKTPAAKTQPQPKTTEPTPETAKEAN
AETNATPAESVKVTPYATPKKKPGRPRKNQVETEAKPAEETTEKPETVPSAQEEKPAAQP
EAEKRPISKPILKPKPAVVDEESSILSDIDADDDFIPIEDLPSEKVELPTELFGKFESTK
AEAATAPEPVAQPQRPRVIRPRDNNNNNNNNNNNNQRNNNQRQPVQQRPMPQQNAAEAAP
VQERRVIEREKPYEFDDILTGTGVLEIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFG
LKTGDVVEGVIRPPKEGEKYFPLVKVSKINGRDAAFVRDRVPFDHLTPLFPDEKFKLCKG
GYSDSMSARVVDLFSPIGKGQRALIVAQPKTGKTILMKEIANAIAANHPEVYMIMLLIDE
RPEEVTDMARSVNAEVIASTFDEPAERHVKIAGIVLEKAKRLVECGHDVVIFLDSITRLA
RAYNTVSPASGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALIDTGSKMDEVI
FEEFKGTGNMELQLDRNLSNKRIFPAVNIVASSTRRDDLLLDKQTLDRMWILRKYLSDMN
PIEAMDFVKDRLEKTKDNDEFLMSMNS
NT seq 2064 nt   +upstreamnt  +downstreamnt
atgtataacatcattcaattgaacgacaagaatttgtcggaactacaagctattgcccag
gaattgggtatcaaaaaaacagactcacttaagaaagaagaacttgtctacaaaatcctc
gacgaacaagccatagccggagctactaaaaaggtagctgccgacaaactgaaagaggaa
cgcaaagaagataagaaaaaacgctctcgggtgacagtaaagaaggaaaacgccgacaag
gttttctcttctaccaagaatggagaactaaccaaaacagatgccaaaacacctgcagcc
aaaacacagccacaacctaaaacaacagaaccgaccccagaaacagctaaagaggcaaat
gccgaaacaaacgccactccggccgaatctgtcaaagtgacaccttatgccactccgaaa
aagaaaccgggacgtccccgtaaaaatcaggtagaaacagaagctaaacccgcagaagaa
actaccgaaaaaccggaaacagtaccatcggcacaagaagaaaagcccgctgcccaaccg
gaagcagaaaaacgtcccatcagcaaaccgattctcaaacccaaaccggccgttgtagac
gaagaaagctcgatcctctcggatatagatgcagacgatgattttatccccatcgaagac
ctgccttcggaaaaagtagaattgccaaccgaactgttcggcaaatttgaatcgaccaaa
gccgaagcagcaacagcccccgaacctgtggcacaaccccaacgcccgcgtgtgattcgc
ccacgagacaacaataacaacaacaataacaacaataataataaccaacgcaacaataac
cagcgtcagcctgtacaacagcgtcccatgccgcaacaaaatgccgccgaagccgcaccc
gttcaggaacgccgcgtgattgaacgtgagaaaccttatgaatttgatgatatcctcacc
ggaaccggtgtattggaaatcatgcaggatggttacggattcctccgttcgtcagactat
aactacctctcttcaccagacgatatctacgtttcgcaatcccagatcaaactgttcggt
ctgaagaccggtgacgtagtagaaggtgtaatccgtccgcccaaagaaggcgaaaaatac
ttcccactggtaaaggtttctaaaatcaacggacgtgatgccgctttcgtacgtgaccgt
gtaccgttcgaccatctcactccgctattccctgacgaaaagttcaagctttgcaaagga
ggctactccgactcgatgtcggcacgtgtagtcgacctcttttcaccaatcggtaaagga
cagcgtgccttgatcgtggctcagcccaagaccggtaaaaccatcctgatgaaagaaatc
gccaatgccatcgctgccaaccatccggaagtatatatgatcatgttgttgattgacgaa
cgtccggaagaagtaaccgacatggcccgcagtgtcaatgcggaagtgattgcttctaca
ttcgacgaacctgccgaacgccatgtgaaaattgccggcatcgtactcgaaaaagctaaa
agattggtagagtgcggacacgatgtagtgatcttcctcgactctatcacccgtctggcg
cgcgcatacaatactgtatctccggcatcaggaaaggtactctcgggtggtgtggatgcc
aatgcactacacaaaccgaaacgtttcttcggagcagcccgtaacatagagaacggaggt
tcgctcaccattatcgctactgccctgatcgacaccggttcgaagatggacgaagtaatc
tttgaagagttcaagggtacaggtaacatggagttgcagctcgaccgcaacctaagtaac
aaacgtatcttccctgctgtcaacattgtggcatcgagcacccgccgcgacgacttgctg
ctcgacaagcaaacactggaccgcatgtggattctacgcaagtatctgtcggatatgaat
cctatcgaagcaatggatttcgtaaaagacagattggaaaaaaccaaagacaacgacgag
ttcctgatgagcatgaacagctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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