KEGG   Borrelia garinii subsp. bavariensis: BG0642
Entry
BG0642            CDS       T00194                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bga  Borrelia garinii subsp. bavariensis
Pathway
bga03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BG0642 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bga03400]
    BG0642 (mfd)
Enzymes [BR:bga01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BG0642 (mfd)
DNA repair and recombination proteins [BR:bga03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BG0642 (mfd)
SSDB
Motif
Pfam: DEAD TRCF Helicase_C UvrB_inter CarD_TRCF_RID UB2H AAA_22 TsaE
Other DBs
NCBI-ProteinID: AAU07472
UniProt: A0A7I6GWM5
Position
complement(652347..655721)
AA seq 1124 aa
MNIDDELTKILKNNSNLKKMKEFLEQNTFFSLTGYEGFFKAFLIKKIKEYSKTGKIILIV
KDEHTLDNIKNDLKVITNQIFELSYFSPLVYKGIGSKSTIFNERIKFLINFYKKNPGIYI
TVLKSLLSKIPDKNTLLNNICKIEKNTKINRKDIEKTLITLGYEKTLRVTIPGEFAIKGE
IIDLYPFGEESPIKIVLNFDKIEEIRKFNPLTQLKKDNEILEFQILPKKEIIWKNEIINS
LKTKIKSVEYNKIFEELNFKKEAKTEEMFYPLVANTYLSDEIEKQTPIVNFEINNFEKEI
EKIHQEYEKLYKEAKEASKNTIDPKRILLNSKTFNLKSDVLFSKIKSSKSKEIVEFKIES
ERSFFSNIMLTKEEFKNWLKNGFKIIIAAESESQKEKLKYIFKELPKVSIEVLKISSSLI
IEEEKIAIILESNIFNTGQKINKAFESSKTKAIDSFIEIEKNSHIVHINHGIGIFRQIKR
IKTSSLEKDYIEIEYAEGEKLFIPIEQTNLIQKYIGSNPKNIKLDKISSKTWIKNKANAK
KRIDEIADKLIELYSKRESIKGIKYPEDNELQLLFESEFPYDETPDQITAIKEIKEDMMS
FKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFNTFKKRFKNFPV
KIEVLSRFIKNNSEKRILKELKSGEIDIIIGTHKILSKKFTCKNLGLIIIDEEQRFGVKE
KEKLKEIRISVDCLTLSATPIPRSLHMSLIKLRDISVLKIPPKNRVKIEAYLESFSELLI
KHAIESELSRDGQVFLVNHNIEELHYLKTLIEKLTPYARIAIIHGKLTGDEIENIMHNFI
KKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLYQLKGRVGRGSKKAYAYFLYQD
SEKLNERSIERLRAITEFSDLGAGFKIAMKDMEIRGVGNLLGREQHGEIESIGLDCYLTM
LNKAIEKKMGKVSSEEEVDIEINHSGFIPDNYAKNEKDKILIYKKIFEIQTEEESKKIRS
EIHDNFGPIPKEINSLLILAELKILAKKLNITKLKETNKTLEIEYKNAESIPMEKIIEIL
KKYPDLLMLNPSYQKSIFLSFENIEKSDKMNYIYKNINLLETNT
NT seq 3375 nt   +upstreamnt  +downstreamnt
atgaatatagatgacgaactaacaaaaatattaaaaaataattccaatttaaaaaaaatg
aaagaatttttagagcaaaatacatttttttcactaacaggatatgaaggatttttcaag
gcttttttaattaaaaaaatcaaagaatatagcaaaaccggaaaaataatattaatagtt
aaagacgagcatacattagataacatcaaaaatgatttaaaagtaattacaaatcaaatc
tttgagctaagctatttcagtccccttgtatataaggggattggctcaaaaagtacgatc
tttaacgaaagaatcaaattcttgatcaatttttataaaaaaaatcctggaatatatatt
acagtattaaaatcactactaagtaaaatacccgataaaaatacattactaaataacata
tgtaaaattgaaaaaaatactaagattaatagaaaagacattgaaaaaactcttataaca
ttaggatatgaaaaaacattaagagtaacaattccaggagaatttgcaataaaaggagaa
attatagacctatacccttttggagaagaaagcccaataaaaattgtactaaacttcgac
aaaatagaagaaataagaaaatttaatcctttaacccaattaaaaaaggataatgaaatt
ttagaattccaaattcttccaaaaaaagaaattatttggaaaaatgaaattattaacagc
ttaaaaacaaagattaaatctgttgaatacaacaagatttttgaagagttgaattttaaa
aaagaagcaaaaacagaagaaatgttttatccgctagtagcaaatacttacttaagtgat
gagattgaaaaacaaacacccattgtaaactttgaaattaacaattttgaaaaagaaatt
gaaaaaatacaccaagaatatgaaaagctctacaaagaagcaaaagaggctagtaaaaat
acaattgatccaaaaagaattctcttaaattctaaaacctttaatctaaaaagcgatgtt
ttattttcaaagattaaaagttctaagtccaaagaaattgtagaatttaaaattgaaagt
gagagaagcttcttctcaaatattatgcttacaaaagaagaattcaaaaattggctaaaa
aatggatttaaaatcattattgcagcagagtctgaatcacaaaaagaaaaactcaaatat
attttcaaagaattaccaaaagtatcaattgaagttttaaaaatatccagctctttaata
atagaagaagaaaaaattgccattattcttgaatcaaacatctttaatacaggacaaaaa
ataaacaaagcctttgaatcttcaaaaacaaaagctattgactcttttattgagatcgag
aaaaatagtcatatagttcacataaaccatggaattggtatatttagacaaataaagaga
ataaaaacaagctctcttgaaaaggattatattgagattgaatatgctgaaggagaaaaa
ctatttattccaattgaacaaacaaatttaatccaaaaatatattgggagtaatcctaaa
aatattaaattagataaaattagttctaaaacatggataaaaaataaagcaaacgcaaaa
aaaagaatcgacgagattgcagacaaattaatagaactttactcaaaaagagaaagtatt
aaaggtattaaatacccagaagataatgaattacaattattatttgaatctgaatttcca
tacgatgaaactccagatcaaataacggcaataaaagaaattaaagaagacatgatgagt
ttcaaagtgatggatcgccttctttgtggagatgttggatttggaaaaactgaagtagca
atgagagctgcatttaaagctgtaatgggaaacaaacaggttattgtactctcaccaaca
accatcttagcagaacagcattttaatacattcaaaaaaagattcaaaaattttccagtc
aaaatcgaggtattaagcagatttataaaaaataactcagaaaaacggattttaaaagaa
ttgaaaagcggggaaatcgatataataataggaacacacaaaattctttcaaaaaaattc
acttgcaaaaatttaggattaataataattgatgaagagcaaagatttggcgtaaaggaa
aaagaaaaacttaaagaaataagaatttcggttgattgtcttactctttctgcaacgcca
attcccagatctcttcacatgtcactaattaagctcagagatatttctgttttaaaaatt
ccgcctaaaaacagagtaaaaatagaagcttatttagaatcgtttagtgaacttttaata
aaacatgcgattgaaagtgaactatctcgagatggtcaagtttttttagtaaatcataat
attgaagaactgcattatttgaaaacgctaattgaaaaattaactccttatgcaagaatt
gcaattattcatggaaaactcacaggagacgagattgaaaacataatgcacaattttatt
aaaaaagcgtatcaaattttattggcaacaacaataattgaaaatggaatagacattcca
aatgcaaatacaataataattaataatgcaaacaagtttggacttgcacagctatatcaa
ctaaaaggaagggttggaaggggatccaagaaagcttatgcttattttttgtaccaagat
agcgagaagctaaatgaacgctctattgaaagactaagagcaataaccgaattttcagat
ctaggagcaggatttaaaatagcaatgaaagatatggaaataaggggtgttggaaatttg
cttggcagagaacaacatggagaaattgagtcgattgggttggattgctatctaacaatg
ctaaacaaagcaattgaaaagaaaatgggaaaagtctcatcagaagaagaagttgatatt
gaaattaaccatagtggatttattcctgacaattatgcaaaaaatgaaaaggataaaata
ctaatctacaaaaaaatctttgaaattcaaactgaggaagaaagtaaaaagataagatca
gaaatccacgacaactttggcccaattcctaaagaaataaatagtctattaatattagct
gaacttaaaattttagcaaaaaaattaaacataacaaaactaaaagaaacaaacaaaacc
ttggaaatagaatataaaaatgcagaaagcattcctatggaaaaaataatagaaatactt
aaaaagtatcctgatttattaatgttaaatccatcgtatcaaaaatcaatatttttaagc
tttgaaaatattgaaaaatctgacaaaatgaattacatatataaaaatattaacttacta
gaaacaaacacatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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