KEGG   Paraburkholderia atlantica CCGE1002: BC1002_2904
Entry
BC1002_2904       CDS       T01217                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bge  Paraburkholderia atlantica CCGE1002
Pathway
bge03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bge00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BC1002_2904
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bge03021]
    BC1002_2904
   03400 DNA repair and recombination proteins [BR:bge03400]
    BC1002_2904
Enzymes [BR:bge01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BC1002_2904
Transcription machinery [BR:bge03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BC1002_2904
DNA repair and recombination proteins [BR:bge03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BC1002_2904
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Peptidase_M23 DUF6744 PYNP_C Baculo_ME53
Other DBs
NCBI-ProteinID: ADG16952
UniProt: D5W5R1
Position
1:complement(3206329..3210567)
AA seq 1412 aa
MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGIRELLRAINIDEQVELLRTELRNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNGKGEGLTFTGVSEVLRAYENK
EVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYATTVGRSILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNQTR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEEDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADIVNPESQETLFEAGTLLDEDAVEDIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTSTMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKT
VRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGVEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSKEL
ADRERFDQIAAEESFEFGTPETPAAEQQHSGE
NT seq 4239 nt   +upstreamnt  +downstreamnt
atgaaagctttgctcgatctattcaagcaagtccaacaacctgaagtttttgacgcgatc
aagatcggcctggcttcgccggacaagatccgttcgtggtcgttcggtgaagtcaagaag
ccggaaaccatcaactaccgcacgtttaagccggagcgcgatggtctgttctgcgcgaag
attttcggtccgatcaaggactacgaatgcctttgcggcaagtacaagcgcctgaagcat
cgtggcgtgatctgcgagaagtgcggcgtcgaagtcacgctcgcgaaggtgcgtcgtgag
cgcatgggccacattgagctggcctcgccggtcgcgcacatctggttcctgaagtcgttg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgtgacatcgagcgcgtgctgtac
ttcgaagcatacgtggtgattgatccgggcatgacgccgctcaaagcgcggcagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgtgccgaaatg
ggcgcggaaggtattcgcgaactgctgcgcgcgatcaacatcgacgagcaggtcgagttg
ctgcgcacggaactgcgcaacacaggctcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtgctcgaggcgttccagcgttcgggcatcaagccggactggatggtcctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctggtgccgctcgacggcggccgtttc
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtttgctcgagctgaaggcgccggaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgactcgctgctcgacaacggccgtcgcggtaaggcgatgaccggcgcgaac
aagcgtccgctgaagtcgctcgctgacatgatcaagggtaagggcggtcgcttccgtcag
aacctgctcggtaagcgtgtcgactactcgggccgctcggtgatcgtggttggcccgacg
ctgaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactcttcaagccgttc
atcttcaacaagctcgaagtgatgggtgtcgctaccaccatcaaggctgcgaagaaggag
gtcgagaaccagacgccggtcgtgtgggacatcctcgaagaggtgatccgcgaacatccg
gtcatgctgaaccgtgcgccgacgctgcaccgtcttggcatccaggctttcgaaccggtg
ctgatcgaaggtaaggcaatccagctgcacccgctcgtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctcgcgtcgaacaacgtgctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggacatcgtgctcggcctgtactacgcgacgcgcgaagcggtgaacggc
aagggcgaaggcctgacgttcacgggcgtgtcggaagtgctgcgtgcgtacgagaacaag
gaagtcgagctggcctcgcgcgtcaacgtgcggatcaccgaaatggtccacaacgaagac
aagtcagaaggcgcgccggcgttcgtgccgaagatcacgctgtacgcgaccacggtcggc
cgctcgatcctgtcggaaatcctgccgccgggtctgccgttctcggtgctgaataagccg
ctgaagaagaaggaaatctcgcgtctgatcaacaccgcgtttcggaagtgcggtctgcgt
gagacggtgattttcgccgaccagctgatgcagtcgggcttccgcctggcaacgcgcgct
ggtatttcgatctgcgtcgacgatatgctcgtgccgccgcagaaggaaaccatcgtcggc
gatgccgcgaagaaggtgaaggaatacgaccgtcagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggttgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggagcagctgtcgacggaaccggtcacggaccgtgacggcaaccagacgcgc
caggagtcgttcaactccatctacatgatggcggactcgggtgctcgtggttccgcggtt
cagatccgtcagctggcaggtatgcgcggtctgatggcgaagccggacggctcgatcatc
gagacgccgattacggcgaacttccgcgaaggtctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggttac
ctgacgcgtcgtctcgtcgacgtgacgcaggatctggtcgtcgtcgaggaagattgcggc
acgtcgaacggcgtggcgatgaaggcgctcgtggaaggcggtgaagtggtcgaagcgctg
cgtgaccgtattctgggacgcgtggccgtggctgacatcgtcaacccggaatcgcaggaa
acgctgttcgaagctggcacgctgctcgatgaagacgcggtcgaagacatcgaacgcctc
ggcatcgacgaagttcgcgtgcgcacgccgctcacctgcgaaacgcgctacggtctgtgc
gcggcctgctacggtcgcgaccttggccgcggttcgctggtgaacgtcggcgaagcggtc
ggtgtgatcgcggcgcagtcgatcggtgaaccgggcacgcagctcacgatgcgtacgttc
cacatcggtggcgcggcgtcgcgcgcggcggtggcttcgtcggtcgaagcgaagtcgaac
ggtacggtgcgtttcacgtcgacgatgcgttacgtcacgaatgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaggcgatgatcaccgacgatcacggccgcgagcgcgagcgt
cacaaggtgccgtacggcgccacgctgctgcagctcgacggtgcgcagatcaaggctggc
acgcaactggccacgtgggatccgatgacgcgtccgatcatcaccgagtacggtggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgctaagcagatcgacgacgtgacg
ggtctgtccacgctcgtcgtgatcgacgtgaagcgtcgtggctcacaggcgtcgaagacg
gtgcgtccgcaggtcaagctgctcgatgcgaacggcgaggaagtgaagatcccgaacacc
gagcactcggtgcagatcggcttccaggtcggcgcgctgatcaccgtgaaggacggtcag
caggtccaggttggtgaagtgctcgcacgtatcccgaccgaatcgcagaagacgcgtgac
attaccggtggtctgccgcgtgtggcggaactgttcgaagcacgttcgccgaaggacgcg
ggtatcctcgcggaagtcacgggtacgacgtcgttcggtaaggacacgaagggcaagcag
cgtctcgttatcacggacctcgagggcaaccagcacgagttcctgatcgcgaaggaaaag
caggttctcgtgcacgatggtcaggtcgtcaacaagggcgaaatgatcgtcgacgggccg
gcggatccgcacgacatcctgcgtctgcagggcgtcgaggcgctgtcgcgttacatcgtg
gacgaagtgcaggacgtgtaccgtctgcaaggcgtgaagatcaacgacaagcacattgaa
gtgatcgtgcgtcagatgctgcgccgcgtccagatcacggacaacggcgatacgcgtttc
atcccgggcgaacaggtcgagcggtcggatatgctcgacgagaacgaccgtatgatcgcg
gaagacaagcgtccggcaacgtacgaaaacgtcctgctcggcatcacgaaggcgtcgctg
tcgaccgactcgttcatctccgcggcgtcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgacctgcgtggcctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggcacgggtctcgcgttccacaaggcgcgcaagagcaaggaactg
gccgaccgcgagcgtttcgatcagatcgcagcggaagagtcgttcgaattcggtacgccg
gaaaccccggctgccgaacagcagcactcgggcgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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