KEGG   Brachybacterium ginsengisoli: CFK41_11230
Entry
CFK41_11230       CDS       T05099                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
bgg  Brachybacterium ginsengisoli
Pathway
bgg03420  Nucleotide excision repair
bgg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bgg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CFK41_11230
   03430 Mismatch repair
    CFK41_11230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgg03400]
    CFK41_11230
Enzymes [BR:bgg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CFK41_11230
DNA repair and recombination proteins [BR:bgg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CFK41_11230
   MMR (mismatch excision repair)
    Other MMR factors
     CFK41_11230
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PDDEXK_1 AAA_30 UvrD_C_2 PhoH DEAD
Other DBs
NCBI-ProteinID: ATG55272
UniProt: A0A291GYQ7
Position
complement(2514965..2518261)
AA seq 1098 aa
MNPSASSSPSSAPSRHEHSAARLAALLEQPPPTAEQTAVIEAPLAPMLVVAGAGSGKTET
MASRVVWLIANGIVEPRQVLGLTFTRKAAHELAERIGARLGTLAAALRAEGLALPRGLER
GGDDLVGQRPLVHTYNGFALDLVREHALAVGIDPELTMMSTSASWQLAHEIVEGWDDSLD
LEASPATLTAALLSLTSSLADHLVTPVQLEAHLRGIRDHLSQIPLQVEGRRRTTPKDVAA
VLGALESRLALLPLLERFAEIRTESSALDFADQVSLAARVAREVPAASDLARRMHRVVLL
DEFQDTSVAQLQMLTDLFGPGHAACAVGDPQQAIYGWRGASAASLAGFAESFATPGSPVL
QRTLSTSWRNDEAVLAVANRLAGPLRSAGAGVSIPELTPRPGAGEGACETIEAADEHAEA
LAIGRWILDRRAEQEEGAAPATAAVLVRARRQIPALVEGLEESGLAVAVVGLGGLLHRPE
VADVRAVLECAHDPGRGDALMRLLTGPRVRLGASDLAVLGRWRDRMGSRLRREGAAPGGQ
DEAETVSLVDAVDDLPPADWTDPSGRSLSATGRERLLQVQQILREMRRLLPLPLPDLVTA
ATRLLEVDLALLERDPGSRALADLEAFRDHAAAFDRTARRGGLGAYLDLLEISEDEEAGL
AVTAAPEAAHDPAAITIVTMHSAKGLEWDLVAVAGLTEGTVPSYDLRRAKTDEAGRVRVP
ADGWLGKLASAAVPTALRGDADTLPELAWAEADTQVDAEALIQDYRFAQGEESLREDRRL
MYVAVTRARRRLLLTSAAWRSGLSSARPRSRYLTEVAELVPEPFRTVQEVPEQNPLESER
PQAQWPPAPGEPEHERARAAALLEEIAGQDGVPVDPELAELVRRAVEDLEQQAAPPLVHS
PPRLSASQVVHQARSPRAAALDLLRPLPRQPSAAAARGTAFHAWLESRFDSATLLDLEDL
LDDGIEEEAEADHRALREAFAASEWADRSPIAVEQEVRTRLGEIAVRGVIDAVFADPEGT
DGGEGVIIVDWKTGRVPRPAQLRERALQLSLYRLAWHERTGLPLARIRTAFHFVADGVTH
EVRRHPSRERIAQMLTEG
NT seq 3297 nt   +upstreamnt  +downstreamnt
gtgaacccgtccgcatcctcgtccccgtcctcggcgcccagccggcacgagcactccgcc
gcccgcctggccgcgctgctcgagcagccaccgcccaccgcggagcagaccgccgtcatc
gaggcgccgctcgcccccatgctggtggtggcgggcgccggctccgggaagaccgagacc
atggcctcccgtgtggtgtggctgatcgccaacggcatcgtcgaaccccgccaggtcctc
ggcctcaccttcacccgcaaggcggcccatgagctcgccgagcggatcggggcgcgcctc
ggcaccctcgccgcggcgctgcgcgcggagggcctcgcactgccccgcgggctcgagcgc
ggcggcgacgacctggtcggccagcgccccctggtccacacctacaacggcttcgccctg
gacctcgtgcgcgagcatgcgctcgccgtcggcatcgaccccgagctgaccatgatgtcc
acctccgcctcctggcagctcgcccacgagatcgtcgagggctgggacgactcgctcgac
ctcgaggcctccccggccaccctcaccgcggccctgctctccctcacctcctccctcgcc
gaccacctcgtcacccccgtgcagctggaggcccacctccgggggatccgcgaccacctc
tcccagatcccgctccaggtcgaggggcggcgccgcaccacgccgaaggacgtcgccgcc
gtgctcggggcgctcgagtcacgactcgcgctgctcccgctgctggagcgcttcgccgag
atccgcaccgagtcctccgccctcgacttcgccgaccaggtctccctcgccgcccgggtg
gcgcgcgaggtgccggccgcgagcgacctggcccgacggatgcaccgggtggtgctgctg
gacgagttccaggacacctccgtcgcccagctgcagatgctcaccgacctgttcggcccc
ggccacgccgcctgcgccgtcggtgatccgcagcaggcgatctacggctggcgcggtgcc
tcggccgcctccctcgccggcttcgcggagtccttcgcgaccccggggagcccggtgctg
cagcgcaccctgtccacctcctggcgcaacgacgaggcggtcctcgccgtcgcgaaccgg
ctcgccggtccactgcgcagcgccggcgcgggggtgagcatccccgagctgactccccgt
cccggtgcgggggagggcgcctgcgagacgatcgaggcggccgatgagcacgccgaggcc
ctcgcgatcggtcgctggatcctcgaccgccgcgccgagcaggaggagggcgcggccccg
gccacggccgccgtgctggtgcgcgcacgccgacagatccctgccctggtcgaggggctc
gaggagagcggactcgcggtcgcggtcgtgggtctcggaggccttctgcatcgtcccgag
gtggccgacgtccgcgccgtgctggagtgcgcccacgaccccggccgcggcgatgccctg
atgcggctgctcaccggtccccgggtccgtctcggcgcgagcgacctggccgtgctgggc
cgctggcgggatcggatgggctcgcgcctgcgccgggagggcgcggcgccgggaggccag
gacgaggcggagacggtctccctcgtcgatgcggtcgacgacctcccgcccgcggactgg
accgacccctccgggcgcagtctgagcgccacgggccgggagcggctgctccaggtccag
cagatcctgcgcgagatgcgccgcctgctgccgctgcccctgcccgacctcgtcacggcc
gcgacccggctgctcgaggtggatctggctctgctggaacgggatcccggatcacgggcg
ctcgccgatctcgaggccttccgcgaccacgccgccgccttcgaccgcaccgcccgtcgc
ggcggcctcggcgcctacctcgatctgctcgagatcagcgaggacgaggaggccgggctc
gccgtgaccgccgctccggaggccgcgcacgatcccgccgcgatcacgatcgtcaccatg
cactcggccaagggcctggagtgggacctggtcgccgtcgccgggctcaccgagggcacc
gtcccctcctacgacctgcgccgcgcgaagaccgacgaggccgggcgcgtgcgggtcccg
gccgacggatggctcgggaagctcgcctccgccgcggtgcccaccgccctgcgcggcgac
gccgacaccctgccggagctggcctgggccgaggccgacacccaggtcgacgccgaggcc
ctgatccaggactaccgcttcgcccagggcgaggagtcgctgcgggaggaccgtcggctg
atgtacgtcgccgtgacccgggcgcgtcggcgactgctgctgacctcggccgcctggcgc
agcgggctgagctcggcccggccccgctcccggtatctcaccgaggtcgccgagctggtg
cccgagcccttccgcaccgtccaggaggtccccgagcagaacccgctggagagcgagcgt
ccccaggcgcagtggccgccggccccgggggagccggagcacgagcgcgcccgggccgcc
gccctgctcgaggagatcgccgggcaggacggcgtcccggtcgatcccgagctggcggag
ctggtgcgccgcgccgtcgaggacctcgagcagcaggccgctccgccgctcgtgcactcg
ccgccgaggctctccgcctcgcaggtcgtgcaccaggcgcgctccccgcgggccgccgcg
ctggatctgctgcgcccgctgccacggcagccctccgcggccgccgcccgcggcaccgcc
ttccacgcctggctggagtcccgcttcgacagcgcgaccctgctggatctcgaggacctg
ctcgacgacggcatcgaggaggaggccgaggccgatcatcgtgcgctgcgggaggccttc
gccgcctcggagtgggcggaccgctcgccgatcgcggtcgagcaggaggtccgcacccgg
ctcggcgagatcgccgtgcgcggcgtcatcgatgcggtcttcgccgatccggaggggacc
gacggcggcgagggtgtgatcatcgtggactggaagaccggccgggtcccccgcccggcg
cagctgcgcgagcgcgccctgcagctctcgctctaccggctcgcctggcacgagcgcacg
ggactgccgctcgcgaggatccgcaccgccttccacttcgtggccgacggggtcacccac
gaggtgcgccggcatccctcgcgcgagcgcatcgcacagatgctcaccgaggggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system