KEGG T04820: BGM20

Alkalicoccobacillus gibsonii: BGM20_11715

Entry

BGM20_11715       CDS       T04820

Name

(GenBank) excinuclease ABC subunit B

K03702

excinuclease ABC subunit B

Organism

bgi Alkalicoccobacillus gibsonii

Pathway

bgi03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:bgi00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BGM20_11715
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgi03400]
    BGM20_11715
DNA repair and recombination proteins [BR:bgi03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BGM20_11715
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BGM20_11715

SSDB

Motif

Pfam:

UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA DUF87 AAA_22 AAA_7 AAA_25 AAA_30 TrwB_AAD_bind AAA_19 AAA_16 AAA_5 AAA_6 DUF6581

Other DBs

NCBI-ProteinID:

AOL31251

Position

complement(2268815..2270800)

AA seq 661 aa
MKDRFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPT
LVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEID
KLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQ
YARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREM
GFCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQV
LVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMVEQIIRPTGLLDP
LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNAEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATV
AAEDKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE
G

NT seq 1986 nt +upstreamnt +downstreamnt
gtgaaagatcgctttgagttagtctcgaaatatcagccccagggagatcagccgaaagcc
attgaaaagcttgtgaaaggaattcaggagggcaagaagcatcagactctgctgggtgca
acaggaactgggaaaacatttacggtgtctaatttgattaaagaagttaataagccgact
ctcgtgattgcccataacaaaacccttgctggacagctttacagtgagttcaaggaattt
tttccgaacaatgctgtcgagtattttgtcagctactatgattattatcagccggaggcg
tatgtgcctcaaacggatacatttatagagaaagacgctagtattaatgatgaaattgat
aaactgagacactccgccacatcagctttgtttgagcgtagagatgtcattattattgcg
agtgtgtcttgtatatacggcctcggttcgcctgaggaataccgggaaatggtcgtgtca
ctgcggactgaaatggaaattgagcgcaacgagctgctcagaaaacttgtagacatccaa
tatgcccgcaacgatatcgactttcagcgcggtacatttcgtgtgcgcggggatgtagtg
gaaatctttccggcatcccgtgatgagcattgtatcagagttgaatttttcggtgacgaa
atcgaacggattcgggaagtggatgcgctgacaggagaaattctcggcgaccgagatcat
gttgcgattttcccggcatcccacttcgtaacgcgagccgagaaaatggagaaggcgatt
caaaatatcgagaaggagcttgaggagcagctgaaggtcatgcatgaaaacggaaagctc
cttgaagcgcagcgtttagagcagcggacaagatatgatcttgaaatgatgcgtgaaatg
ggtttctgctccggcatcgagaactattcaagacatttgacgctgcggcctccaggttca
acgccgtatacgcttcttgattatttcccagacgattttatgatcgtggtggatgagtcg
catgtgacaattcctcaggtgcgcggcatgtttaacggagaccaggcgcggaaacaggtg
ctcgtggatcacggcttccggcttccatcagcgcttgataaccgtccgcttcgttttgag
gaatttgaaaagcatatgcacaatatcgtgtatgtatcagcaacaccagggccgtacgag
attgaacatacagatgaaatggtcgaacagatcattcgtccgacggggcttcttgacccg
cttattgacgtccgtccaatcgaaggtcagattgacgacttgatcggcgaaattcaagct
agaatcgagcggaatgaacgggtgcttgtgacaactttgacgaagaagatgtcagaggat
ctgaccgattatttaaaggaaatcggcattaaagtaaactatctgcattctgagatcaag
acgcttgaacggattgaaattatccgcgacctgcgccttggcaagtacgatgtgcttgtc
ggcatcaacctgctgagggaaggtttggacattcccgaagtatcccttgttgcgattttg
gatgcggataaggaaggtttccttcgttcggagcggtcgctgatccagaccatcggacgg
gcagcgagaaatgcggaaggccgcgtcattatgtacgccgataaaataacgaagtctatg
gaaattgcgattaatgaaacaaaacgccgccgcgagcagcaggagcggtttaatgaagag
cacggcattacgccgaaaacgataaataaagaaattcgcgatgtcattcgtgccacagta
gcagctgaggataaagcggaatacaaaacaaaagccgcgccgaagctgtcgaaaatgacg
aagaaagaacgccagaaagtcgttgaacagatggagcatgaaatgaaggaagccgccaag
gcgcttgactttgagagagccgcggagcttcgcgatttacttttagagctaaaagcggaa
ggatga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (18)   
   Pfam (18)   
All databases (25)   

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