KEGG T04820: BGM20

Alkalicoccobacillus gibsonii: BGM20_13830

Entry

BGM20_13830       CDS       T04820

Name

(GenBank) RNA helicase

K05592

ATP-dependent RNA helicase DeaD [EC:3.6.4.13]

Organism

bgi Alkalicoccobacillus gibsonii

Pathway

bgi03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:bgi00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BGM20_13830
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bgi03019]
    BGM20_13830
   03009 Ribosome biogenesis [BR:bgi03009]
    BGM20_13830
Messenger RNA biogenesis [BR:bgi03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BGM20_13830
Ribosome biogenesis [BR:bgi03009]
Prokaryotic type
  rRNA helicases
   BGM20_13830

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII AAA_19 CMS1

Other DBs

NCBI-ProteinID:

AOL31646

Position

complement(2684143..2685582)

AA seq 479 aa
MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL
CELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK
SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML
FSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENP
DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA
ARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG
FEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIRAVD
FVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKANK

NT seq 1440 nt +upstreamnt +downstreamnt
atgagtcattttaaaaactatcaaatcagtcatgacattttacgagcattggaaggactg
ggatatacagaaccgaccaaggtgcagcagagtgtgatccccgctgcccttgaacgaaag
gatcttgtcgtcaaatcacagacaggaagcgggaaaacggcttcgttcgggattcctctc
tgtgagctggcgaattgggatgaaaacaagccgcaggcgcttattttaacaccgacccgt
gagcttgcggtgcaagtaaaggaagatatcacgaacatcggacgatttaaacggatcaaa
gcgacagccgtatttggaaaatcctcctttgataaacaaaaagctgagcttaagcaaaaa
agccacattgttgtcggcacgccgggacgtgttctggatcatatcgaaaaaggcacgctg
ccgttggatcgtctctcttatttggtcattgatgaagcggatgagatgctgaatatgggc
ttcattgagcaggtggaggcgattatcaagcatctgccgactgagcgtacgacgatgctg
ttttcagcgacgcttccgcaggatatcgagaagctgagccgtcaatatatgcaaaacccc
gagcatatcgaagtcaaagcggccggcctaaccacaaggaatattgaacatgcggtgatt
caagtaagagaagagaataaattttcattgctgaaagatgtgctgatgacggagaatccc
gacagctgcatcattttctgccgaacgaaggagcacgtcaatcagctgaccgatgaattg
gatgacttaggatatccatgcgataaaattcacggcggaatgattcaggaagaccgattc
gacgtcatgaatgaatttaaacgtggcgagtaccgttacttagtcgcgacggatgtcgcc
gcgcgcgggattgatattgaaaatatctcccttgttatcaactatgatctgccggttgaa
aaggaaagctatgtccaccgcacgggccgaacgggacgcgcagggaacaaaggaaaggcc
atttcgtttgtcacggccttcgaaaaacggtttttagccgacattgaagaatatatcgga
tttgaaatccaaaaaatagaagcaccttctcaagaggaagtggcaaggaagaaaccagaa
tttctagctaaactgaatgaccgtccggaaagcaaaaaggacaaaagtgaagagctgaat
aaagacattatgaagctgtattttaacggcggaaagaaaaagaaaatcagagccgttgat
tttgtaggaacgattgccaaaattgacggtgtgtcagctgacgacatcggcatcattacg
atcatggataacgcctcatacgttgagattttaaatggtaaaggccctcatgttctcaaa
gtgatgaagaacacaaccgtcaaagggaaacagctgaaggtgaataaagcgaataaatga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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