KEGG   Candidate division Kazan bacterium GW2011_GWA1_50_15: VE98_C0001G0224
Entry
VE98_C0001G0224   CDS       T03988                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase, DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bgw  Candidate division Kazan bacterium GW2011_GWA1_50_15
Pathway
bgw03030  DNA replication
bgw03410  Base excision repair
bgw03420  Nucleotide excision repair
bgw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bgw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VE98_C0001G0224 (ligA)
   03410 Base excision repair
    VE98_C0001G0224 (ligA)
   03420 Nucleotide excision repair
    VE98_C0001G0224 (ligA)
   03430 Mismatch repair
    VE98_C0001G0224 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bgw03032]
    VE98_C0001G0224 (ligA)
   03400 DNA repair and recombination proteins [BR:bgw03400]
    VE98_C0001G0224 (ligA)
Enzymes [BR:bgw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     VE98_C0001G0224 (ligA)
DNA replication proteins [BR:bgw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     VE98_C0001G0224 (ligA)
DNA repair and recombination proteins [BR:bgw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     VE98_C0001G0224 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     VE98_C0001G0224 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     VE98_C0001G0224 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      VE98_C0001G0224 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2
Other DBs
NCBI-ProteinID: AKM84681
UniProt: A0A0G4B9V9
Position
215580..217556
AA seq 658 aa
MNKVEARVEIERLRRELNRHSRLYYVLDKPEISDAEYDRLYRKLVGLEAEYPDLVVPDSP
TRRVGDKVSGEFASIRHIRPRMSLDDAFSYSEVQAFEERAKKLTEAKLEYVCELKIDGLQ
IVLTYRSGLLTTAATRGDGITGEDVTHTVRTIRDIPLKLSKPLDIVVSGEIYISKKDFAK
INAEQTKAGGQLYANPRNLAAGTVRQLDPRVASTRRLRSFVYDLEGEVSPKTQMDILKNL
ADLGFSTNAENKLCQNLGEVEKFIQRWGNERNKLPYETDGVVVKVNDMAARRRLGATAKA
PRWAIAYKFPAEQKPTKVLDIVVQVGRQGTLTPVAVLEPVLLAGSTVSRATLHNEDEIKR
KDVRVGDTVIVQKAGDIIPEVISVIKSKRPATAKPFKMPTTCPICSGKVVRVEGEAAHKC
VNKNCFVVQLRKLEHFVSRDAFDIKGLGTKILEQLYKEGLVRDPADIFTLEEGDIEPLER
FAEKSAGNLIKSIQGAKTISLDRFIYALGILHVGAQTARDLTGMFRNLDELLHAFPESFR
EVDGVGDKVAQSIFEFFQDEHNLGLVKKLLQAGIIIKQAVRSTGDRLNGQTFVITGTLAS
MSREEAEDKIRALGGKASGSVSAKTSFVVVGDNPGSKYTQANKLGVKILDEKEFIKLV
NT seq 1977 nt   +upstreamnt  +downstreamnt
atgaacaaggtagaggccagagtggaaatcgagcgattgaggagggaattgaaccggcat
agccggttgtattatgtgttggacaagccggagatcagcgacgccgagtatgaccggcta
taccgcaaattggtcgggctggaggccgaatatcctgacttggttgtacccgactctcca
acgagaagggtgggggataaggtctcgggtgagtttgcttccattcgtcatatccgtccg
cggatgagtttagatgatgcgttctcgtattcagaagtgcaggcgttcgaagagcgcgcc
aaaaaactgactgaggcaaaattagagtatgtctgtgaattgaagatagacggcctgcag
atcgtactgacctatcgcagtgggttactcactacggccgcgacccgaggggatggcatc
accggggaggatgtgactcacaccgtgagaacgatacgggatattccgctgaaattatcc
aaaccattagatattgtcgtatctggcgaaatttatatcagcaaaaaggactttgccaag
attaacgcggagcaaaccaaagccggcggtcaactttacgccaacccccgcaatttggcg
gccgggacggtgcggcagctggacccaagggtggcgtccacccgacggcttagaagtttt
gtttatgatctagaaggggaggtaagtcccaagacccagatggatattttgaaaaacttg
gcggacctaggattttcgactaatgcagaaaataagctctgccaaaatttgggggaggtg
gaaaaatttattcagcgttgggggaacgagcggaataaattaccgtatgaaactgatggt
gtggtggtgaaggtcaacgatatggctgcgcgccgccggctaggggccacggccaaggca
ccgcgctgggccatcgcctataaatttccggccgaacagaaaccgaccaaagttttggat
atcgtcgtgcaggtggggagacaagggacattgacgccggtggcagtactggaaccggtg
ttattggccggttcaacagtgagccgggcgactttgcacaatgaagatgagataaaacgc
aaagatgtacgggtaggggatacggtgatagttcaaaaagccggcgatatcatcccggaa
gtgatcagtgtgataaaatccaaacggccggcgacagccaaaccattcaagatgccgacc
acttgtccgatctgcagtggcaaggtagtacgagtcgagggcgaagctgcgcacaagtgc
gtgaataaaaattgtttcgtggtccagctgcgtaaattggagcactttgtttcccgagac
gcttttgatattaaaggcttaggcaccaagatactggaacaactttataaagagggttta
gtacgcgacccggcggatatctttactttagaagagggcgatattgagcccctagagcga
tttgcggaaaagagtgctggcaatttaattaaatccattcaaggtgccaaaaccatttcg
ctggacagatttatttacgccttagggattttgcatgtcggagcccagacggcgcgggac
ctgacggggatgtttcgcaatttggatgaactgctacacgcctttccggagagttttcgg
gaggtagacggggtaggggacaaagtggcacaaagtatatttgagttttttcaagatgag
cacaacctagggttagtgaaaaagttgttgcaagcggggataattatcaagcaagccgtc
cgttcaaccggcgacagattgaatggacaaaccttcgtgataactggaactttagcgtcc
atgtctcgtgaggaggcggaggataagattcgtgctttaggcgggaaagccagcgggtcg
gtctccgccaaaactagttttgtggtagttggagataatccgggcagcaagtacacccaa
gctaataaattaggcgtgaagattttagatgagaaagaatttattaaattagtttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (44)   

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