KEGG   Bordetella holmesii 44057: D558_3079
Entry
D558_3079         CDS       T03379                                 
Symbol
dnaX
Name
(GenBank) DNA polymerase III, subunit gamma and tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
bhm  Bordetella holmesii 44057
Pathway
bhm03030  DNA replication
bhm03430  Mismatch repair
bhm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bhm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    D558_3079 (dnaX)
   03430 Mismatch repair
    D558_3079 (dnaX)
   03440 Homologous recombination
    D558_3079 (dnaX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bhm03032]
    D558_3079 (dnaX)
   03400 DNA repair and recombination proteins [BR:bhm03400]
    D558_3079 (dnaX)
Enzymes [BR:bhm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     D558_3079 (dnaX)
DNA replication proteins [BR:bhm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     D558_3079 (dnaX)
DNA repair and recombination proteins [BR:bhm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     D558_3079 (dnaX)
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA DNA_pol3_gamma3 RuvB_N AAA_16 AAA_22 AAA_14 AAA_2 AAA_18 AAA_5 AAA_30 TsaE nSTAND3 AAA_7 AAA_19 PIF1 RsgA_GTPase Rad17 AAA_28 RNA_helicase T2SSE SKI
Other DBs
NCBI-ProteinID: AIT27725
Position
2882648..2883784
AA seq 378 aa
MTYLVLARKWRPRSFDTLVGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAK
SLNCETGITSKPCGVCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRF
KVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPP
ESIVGHLQAVLGQEQIGFEVPALRLIGQAASGSMRDALSLTDQAIAYSAGNLTEDAVRGM
LGTIDQRHLVRLLDALATGDARGVLAVADELATRGLSYAGALADFAVLLSRIAIEQRVSG
VTPADDPSGRISRAWRQACIPMRSSFSIPLPCIAAANSAWRRTSTPGSSWPVCACLPSMA
RRGRRRSAKHHVPHPSQR
NT seq 1137 nt   +upstreamnt  +downstreamnt
atgacttatctggttctggcccgcaagtggcgtccgcgatccttcgataccctggttggc
caggatcacgtcgtgcgcgcattgacgcatgccctggacacccagcgtttgcaccacgcc
tggctttttaccggtacacgtggcgtgggcaagaccacgctgtcgcgtatcctcgccaaa
tccctcaactgcgaaaccggcattacctccaagccgtgtggcgtgtgccgtgcgtgcacg
gagatcgatgctggccgtttcgtcgactacctcgaacttgacgcggcttccaaccgaggc
gtcgaggagatgacgcaactgctcgagcaggcggtgtatgcaccgggagcggggcgtttc
aaggtctacatgatcgacgaagtccacatgctcaccgggcatgcgttcaacgccatgctc
aagaccctcgaagagccgccgccgcacgtcaagttcatcctggccacgacggatccacag
aaaatcccggtcaccgtactgtcgcgctgcctgcaattcaatctcaagcagatgccgccc
gagtccatcgtgggccatttgcaggcggtgctcggtcaagagcagatcggcttcgaggtg
cccgccctgcgcctgatcgggcaagctgcttcgggttccatgcgcgacgccctgtccctg
acggatcaggcgattgcctacagcgcaggcaatctgaccgaagacgcggtgcgcggcatg
ctgggcaccattgatcagcgccatttggtgcgcctgttggatgccctggccacgggggac
gcccgcggcgtgctggccgtggccgatgagcttgctacccgtggtttgtcctatgctggc
gcgctggcggatttcgccgtgctgctctcgcgcatcgcgatcgagcaacgtgtcagcggc
gtcaccccggccgacgacccctcgggcaggatatcgcgcgcctggcggcaagcctgcatc
ccgatgcggtccagcttttctattccgttgccgtgcatagccgcagcgaactcagcctgg
cgccggacgagtacgccgggttcgtcatggcctgtctgcgcatgcttgccctcaatggcg
aggcggggccggcgacgcagcgcgaagcaccacgtaccgcaccccagccagcgttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (22)   
   Pfam (22)   
All databases (34)   

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