KEGG   Bordetella holmesii ATCC 51541: D560_2170
Entry
D560_2170         CDS       T03052                                 
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
  KO
K01925  UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
Organism
bho  Bordetella holmesii ATCC 51541
Pathway
bho00470  D-Amino acid metabolism
bho00550  Peptidoglycan biosynthesis
bho01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:bho00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    D560_2170 (murD)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    D560_2170 (murD)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:bho01011]
    D560_2170 (murD)
Enzymes [BR:bho01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.9  UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
     D560_2170 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:bho01011]
 Precursor biosynthesis
  Amino acid ligase
   D560_2170 (murD)
SSDB
Motif
Pfam: Mur_ligase_M Mur_ligase_C MurD-like_N
Other DBs
NCBI-ProteinID: AHV94138
Position
2027705..2029078
AA seq 457 aa
MALREADVQYHLGCASQFDEALLDGVSQLVLSPGLSPGQEPAASLLRAAATRGVEVVGEI
ELFARALARLAEARDYRPRVLAVTGTNGKTTVTALTRQLIEASGLSVRAAGNISPAALTA
LMEALDQDQLPDVWVLELSSFQLETTRSLSADAAVVLNVTQDHLDWHGSMQAYSQAKARL
LTMACVAIVNRDDPLTTAMVSDLKGLNARSFGRDLPQWVGDMGLELGQGVSWLVACEPSD
FDDQAAPVRRKKDAPPPVRNAGRMSRLMPVDALRIRGVHNALNALAALQLARVLELGWGA
LLRALREYAGEPHRAAFVRNVGGVDYINDSKGTNVGATVAALEGLGQSVVLIAGGQGKGQ
DFSPLRAVVARHARAVVLIGVDGPAIGDILADTGVVLVQAQDMREAVRRSAELAQAGDAV
LLSPACASLDMFRNYPHRGEVFAQEVDELARDQGEVA
NT seq 1374 nt   +upstreamnt  +downstreamnt
gtggcgctgcgcgaggctgacgtccaataccatctgggctgcgccagtcagttcgatgaa
gcgctgctcgatggcgtctcgcaactcgtgctcagcccagggctgtcgccgggacaggag
cctgcggcaagcctgctcagggccgccgccacacgtggcgtcgaggtcgtaggcgagatc
gaactgtttgcgcgcgcgttggctcgtttggctgaggcacgcgactaccggccacgcgtg
ctggccgtgactggcaccaatggcaaaaccacggtgacggcactgacccggcagttgatc
gaggccagtggcctgagcgtgcgtgcggcaggcaatatcagcccggctgcgctgaccgcg
ctcatggaggctctggatcaagaccagctgcctgacgtctgggtgctggagctttccagc
ttccagttggaaaccacccgcagtctgagcgcggatgctgccgtggtgctcaatgtcacc
caggatcatctggattggcacggcagcatgcaggcctactcgcaagccaaggcccgcctg
ctgacgatggcgtgtgtggcgattgtcaatcgcgatgaccccctgaccaccgcgatggtc
agcgacctcaagggcctgaacgcgcgcagcttcgggcgtgatctgccgcaatgggtcggt
gatatgggcctggagctcgggcagggcgtgtcctggctggtggcttgcgagccaagcgac
ttcgacgatcaggccgcgcccgtgcgccgcaaaaaggacgcgccgccgcctgtgcgcaat
gctggccgcatgagccgcttgatgccggtcgatgccttgcgcatccgtggcgtgcacaac
gcgctcaatgctctggcggcgttgcaactggcacgggtgctcgagctgggctggggagcc
ttgctgcgcgcgttgcgcgagtatgccggcgagccgcaccgtgcggcctttgtgcgcaac
gtaggcggcgttgattacatcaatgacagtaagggcaccaatgttggcgccacggtggct
gccctcgaagggttgggtcagagcgtagtgctgattgccggcgggcagggcaaaggacag
gatttctctcccttgcgggccgtcgttgcccggcatgcccgtgccgtcgtgttgattggt
gtcgacggcccggccattggcgacatactggccgacaccggcgtggtcttggtccaggct
caggacatgcgcgaggccgtgcgccgctctgccgaactggcgcaagccggtgatgccgtg
ctgctgtcgccggcctgcgccagcctggatatgttccgcaactatcctcatcgcggcgaa
gtcttcgcgcaagaggtcgatgagttggcccgcgatcagggagaggtggcatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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