KEGG   Bifidobacterium indicum: BINDI_1172
Entry
BINDI_1172        CDS       T03564                                 
Name
(GenBank) ribonuclease E/G family protein
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
bii  Bifidobacterium indicum
Pathway
bii03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bii00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BINDI_1172
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bii03019]
    BINDI_1172
   03009 Ribosome biogenesis [BR:bii03009]
    BINDI_1172
Enzymes [BR:bii01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BINDI_1172
Messenger RNA biogenesis [BR:bii03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BINDI_1172
Ribosome biogenesis [BR:bii03009]
 Prokaryotic type
  rRNA processing factors
   BINDI_1172
SSDB
Motif
Pfam: RNase_E_G DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: AIC92433
UniProt: A0A087VVY0
Position
complement(1483167..1485989)
AA seq 940 aa
MPRNKNEDSQEDSSANSMQTSQQASDQPQAEKGTTRRRRSGRRVVRVAGAAGAHVPVQVE
ADEHEEAASDKGRRRRVKVQDDGGDTRSESVSRRRSHRNDPEQEPGLSESQALDRDVTEE
DAEAPTSRRRKVQTRSRRSNRAKASESTESGSRSRSGAGRDVEDERDDRQERALEAVESL
TGTDPGDDDQDRKSRSTRSRSRSSRSGSSQSAPARPMTSLLFQEPVIPVVQDDDDEPVME
DDEEPAPTRSSRRSRSRRSRNAIDRESLAEDEERSESGSRRSRRLNAEERRAADEVEQIE
EDLDHEGITFINDEDESEEEVTSRSSRRRRRSKGERTHEDETEKSGSRRNRRSRDHESEE
EEEGGLTRRRRRRRGSKSSDSESEETGGTRRSRKQQYIDEITDIEGSTRLEAKKQRRRDN
RRERSRQSQLVEQDFLARRESVNRLMVVREKEQHTQISVIEDDILVEHYVSDIQEVSTVG
NVYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDTTRLEGQPRRIELAFKSGDPVLV
QVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLADHERSRLKGIISRIAPKDM
GVIIRTAADGASEEALTKDLENLQRQWEEIESKRKEFLHGKRPKLLQGEPDVAIRVVRDI
FNDDFASLVVQGDRVYDRVENYLDTMAPDLRDKLVGWDPSEHEGKDVFDKWGIDSQLRKG
MERQVYLPSGGSLVIDRTEAMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLR
DIGGMIMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLV
EAFSEECPTCHGRGFILHDEPTISASYDDPYAVKGGDPFVKTNKHSHNAPAKESTTTGST
PAVKAKLARIAAAAQAAADEDVQDDDEMEATNPLDVDKES
NT seq 2823 nt   +upstreamnt  +downstreamnt
gtgcccaggaacaagaacgaggacagtcaggaagactcctcagcaaactcaatgcagacc
agtcagcaggcgtccgaccagcctcaagccgaaaagggaacaactcggcgccgccgcagt
ggcaggcgcgtggtgcgcgtggccggtgcggccggtgcccatgtgcccgtccaggtcgag
gccgatgagcatgaggaggcggcctccgacaaggggcgtcgtcgccgtgtcaaggtccag
gacgatggtggggatacccgttcggagtccgtttcccgtcgccggtcacacaggaatgat
ccggaacaggaaccgggcctgagtgaatcgcaggctttggacagggatgtgaccgaagag
gacgcggaggcacctacctcccggcgccgtaaggtgcagaccaggtcccgcaggtcaaac
cgcgccaaggcctcggaatcgactgaatccggttcccgcagccgttccggcgctggccgt
gatgtcgaagacgagcgggatgaccgccaggaacgtgctctggaggccgtggaatccctg
accggtaccgatccgggggatgatgatcaggaccgcaagtccaggtcgaccaggtcccgg
tcccgttcgtctcgttccggttcgtcccagtcggcaccggcccggcccatgacctccctc
ctcttccaggagccggtgattccggtggtgcaggatgacgatgacgagcccgtcatggag
gatgacgaagaaccggcgcccaccaggtcatcccgcagatccaggagccgccgctcccgc
aatgccatcgaccgtgagtctctggcagaggacgaggagcgttccgaatcgggatcccgt
cggtcgcgaaggcttaacgccgaggagcgtcgtgccgccgatgaggtggagcagatcgag
gaggacctcgaccatgagggcatcaccttcatcaacgatgaggacgagagtgaggaggag
gtcacctcccgctcttccaggcgacgtcgtcgcagcaagggtgagcgcacccatgaggac
gaaaccgagaagtccggttctcgtcgcaatcgccgctcgcgcgaccatgagagtgaagag
gaggaagaaggggggctgacccgtcgacgcaggcggaggcgcggctccaagtcttccgat
tccgaaagcgaggagaccggcggtacgcggcgctcccgcaagcagcagtacatcgacgaa
atcacggatatcgaggggtccacccgcctggaggccaagaagcagcgccgccgcgacaac
cgtcgtgagcgttcgcgccagtcccagctggtggagcaggacttcctggcccgccgtgag
agcgtaaaccggctcatggtggtgcgtgaaaaggaacagcacacacagatctcggtcatc
gaggacgacatcctggtggagcactatgtctccgacatacaggaggtctccacggtcggc
aacgtctacctggggcgggttcagaacgtcctgcccagcatggaggcggcctttgtcgat
atcggacaggcccgcaacggcgttctctacgcgggtgaggtcaactgggacaccacccgt
ctggaggggcagcctcgacgtatcgagctggccttcaagtccggtgatccggtcctggtc
caggtcaccaaggatccgatcgggcataagggtgcccgtctgacctcccaggtgaccctg
gccggacgtttcctggtcctggtgccctccgggggcatgaccggcgtcagccgtaagctg
gccgaccatgagcgctcccgtctgaagggaatcatctcacgtatcgcccccaaggacatg
ggggtcatcatccgcaccgcggccgatggtgccagcgaggaggccctgaccaaggacctg
gagaacctccaacgccagtgggaggagatcgagtccaagcgcaaggagttcctgcacggc
aagcggcccaagctccttcagggcgaacccgatgttgccatccgtgtggtgcgggatatc
ttcaacgatgatttcgccagtcttgtcgtccagggcgatcgggtctatgaccgggtcgag
aactacctggacaccatggcccccgatctcagggacaaactggtggggtgggacccgtcc
gagcatgaaggcaaggacgtgttcgacaagtggggcatcgacagccagctgcgcaaggga
atggagcgtcaggtctacctgccctccggcggttccctggtcatcgaccgtaccgaggcc
atgaccaccatcgatgtcaacacaggacgattcatcggcaggggcaagtccttggaagag
accgtgaccaggtgcaacctggaggcctccgaggagattgcccgccagctgcgtctgcgc
gacatcggcggcatgatcatgatcgactacgtggatatggtcatgccggccaaccgcgac
ctggtgcttcgccgtctggtggagtgcctggcccgggatcgcaccaagcaccaggtggcc
gaggtcacctctctgggtctggtccagatgacccgcaagcgggtgggccagggcctggtc
gaagccttctccgaggagtgccccacctgccatgggcgcgggttcatcctccatgatgaa
ccgaccatctccgcctcctacgacgacccctatgccgtcaagggcggggatcccttcgtc
aagaccaataagcacagccacaatgcgccggccaaggagagcacgaccaccggttccacc
cccgctgtcaaggccaagctggccaggatcgcggcagccgcccaggccgctgcagacgag
gacgtgcaggacgatgacgagatggaggccacgaatccgctggatgtcgacaaggagtcg
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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