KEGG   Bombus impatiens (common eastern bumble bee): 100742572
Entry
100742572         CDS       T04362                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
bim  Bombus impatiens (common eastern bumble bee)
Pathway
bim03020  RNA polymerase
bim03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bim00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100742572
  09124 Replication and repair
   03420 Nucleotide excision repair
    100742572
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bim03021]
    100742572
   03400 DNA repair and recombination proteins [BR:bim03400]
    100742572
Enzymes [BR:bim01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100742572
Transcription machinery [BR:bim03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     100742572
DNA repair and recombination proteins [BR:bim03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100742572
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R DUF3137
Other DBs
NCBI-GeneID: 100742572
NCBI-ProteinID: XP_012247383
UniProt: A0A6P3V3M5
Position
Unknown
AA seq 1902 aa
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSAERKPGHGGCGRYQ
PNLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAILRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFEVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGTAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPNYSPSPGYSPTSPSYSPTSPSYSPTSPSYSPTSSS
YSPTSPSYSPTSPSYSPTSPSYSPSPSYSPTSPSYSSTSPSYSPTSPSYSPSSPNYTPAS
PSYSPTSPSYSPSSPQYSSASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPTYS
PTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTS
PTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq 5709 nt   +upstreamnt  +downstreamnt
atggccacgtccgactccaaagcgcctctgcgaaccgtaaaaagggttcaattcggcatt
ctttcacccgatgaaatacgtcggatgtcggtcacagatggcggcattcgatttccagaa
actatggaaggtggtcgcccaaagcttggtggacttatggatcctagacaaggtgtcatt
gatagaaattctaggtgtcaaacttgtgctggtaatatgacagaatgtccaggacacttt
ggtcatatagatttagcaaaaccagtttttcatgttggtttcataacaaagacaataaaa
attttgagatgtgtatgtttttattgttcaaaacttcttgtcagtccacacaatccaaaa
attaaagaaattgttatgaaaactaaaggtcagccacggaaacgtctaacttttgtttat
gatttatgtaaaagtaaaaatatttgtgagggtggtgatgagatggatattaataaagaa
aatcaagaacaacaatctgcagagagaaaacctggacatggtggatgtggtagatatcaa
ccaaatcttcggagatctggattagatgttactgcagaatggacacacgtgaatgaagat
tcgcaggaaaaaaagatggcactcactgcagaaagagcttgggaaattttaaagcacatt
acagacgaagaatcatttatccttggcatggacccgaaatttgcacgaccagattggatg
gtagtaactgttttgcctgttccacctttatcggtcagaccagcagttattatgtatggt
tctgccaagaatcaagatgacttaacacataagcttgctgatattataaaagcaaataat
gaattaatcagaaatgagcaagcgggagcagcagcgcacgtgatatcggaaaatataaaa
atgttacaatttcacgtagcaacgttagttgataacgatatgcctggcatgccacgagct
atgcagaaatcaggcaaacctctaaaagctataaaagcgagattgaaagggaaggaagga
agaataagaggaaatttgatgggtaaacgtgttgacttttctgctcggactgttattact
cctgatccaaatttgcgaattgatcaggtcggtgtacctcgaagtattgctcagaattta
acattccccgaaattgttacaccttttaatatcgataaaatgcaagaactcgttagacgt
ggaaactcacaatatccaggtgctaaatatatcgtcagagataacggggaaagaatcgat
ttaaggttccacccaaaaccatccgatttacatcttcaatgcggatacagagtggaacgt
cacatccgggatggtgacctagtaattttcaatcggcaaccaacactacacaaaatgagt
atgatgggtcatagggtaaaagtgttgccatggagtacgttccgtatgaatcttagttgc
acatctccttataatgccgattttgacggtgacgagatgaatttgcatgttcctcagtca
atggagactcgagcagaagtagaaaacattcatgtaacaccgcgtcaaattattactccc
caagctaataaaccagtcatgggtattgtacaggacacacttactgctgtaagaaaaatg
actaaaagagacgttttcatagaaaaggaacagatgatgaatatccttatgttcttacct
agttggaatggcaaaatgcctcagccatgcatattaaaaccaaagcctctatggactggt
aaacaaatcttttccttgatcataccaggcaacgtgaatatgataagaactcacagtaca
catccagatgaagaagatgatggcccatacaaatggatttcacctggtgataccaaagtc
atggtagaacacggagaacttgttatgggtatactctgtaaaaagaccttgggtacatct
gctggatctttgcttcacatttgtatgttggaattaggacacgaagtttgcggacgattt
tacggaaatattcaaactgtaattaataattggttactactggaaggtcactcgatcggt
attggagacaccattgccgatccacagacttatttagaaattcaaaaagccattaggaaa
gctaaagaggacgtgatagaagtgattcaaaaagctcacaacatggaattggaacctact
cctggtaataccttgaggcaaactttcgaaaatcaagtaaacagaattttaaacgatgct
cgtgataagactggtggttctgctaagaaatctttgactgaatacaacaacctaaaggct
atggtagtatcaggatcaaaaggatctaatattaatatctctcaggttattgcttgtgtc
ggtcaacaaaacgtagaaggtaaacgtatcccgtttggttttcgcaaaagaacgttgccc
cattttattaaagatgattatggtccggaatccagaggatttgttgaaaactcgtacctt
gctggtttaactccatccgagttttatttccacgctatgggaggtcgtgagggtcttatc
gatactgccgtaaaaacggcagaaactggttacattcagcgtcgtttgataaaagctatg
gagtctgtaatggtacattatgatggtacagtcagaaactctgtgggtcaacttatccaa
ttgcgttatggcgaggatggtctatgcggtgaaaccgtcgaatttcagaatttgcctact
attaaattgagtaataaagcatttgaaaagaagttcaagttcgatccaaccaatgaacga
tatcttcgtcgtatctttaacgaagatatagttagagaaatgatggggtctggtgaagtc
atatccgaactagaaagagaatgggaacaattgaacaaagatcgtgctatacttagagaa
attttccctagtggagaatcaaaagttgtactgccttgtaatttacaaagaatgatttgg
aatgtacagaagatttttcatataaataaacgtgcacctactgatcttagtcctatgagg
gtcatacagggtgtaaaggatcttttggataaatgtatcattgtggctggtgatgataga
ctcagcaaacaggctaatgaaaatgccacattgctattccagtgcttagtgagatctaca
ttgtgtacaaaatgtgtttctgaagaatttcgattatccagtgaagcctttgaatggctt
attggagaaattgaaaccagattccaacaagcacaggtatcacctggagaaatggtaggc
gctttagctgcacagtcacttggtgaacctgcaacccagatgacactgaacactttccat
tttgctggtgtatcgtcgaaaaacgtaacccttggtgtacctagattgaaggaaattata
aacatcagtaagaaaccaaaggctccgtcgttgaccgtatttttgacgggagctgcagca
agagatgccgagaaagcaaaaaatgtactttgtcgattggaacacaccacattgagaaaa
gttacagcaaatactgcgatctattacgatccagatccacaaaataccgtaatagcggaa
gatcaagaattcgtcaacgtttactatgaaatgcctgattttgacccgaataaaatatca
ccatggttacttcgaattgagttggatcgcaagaggatgactgataaaaaattaactatg
gaacaaattgcagaaaaaattaatgccggattcggtgacgatttgaactgtatttttaac
gatgataacgctgagaaattagttctaagaattaggataatgaacagcgacgataacaag
ttccaagatagtgaggaagagactgtagataaaatggaggatgatatgttccttcgatgt
attgaagcgaatatgcttagtgacatgacattacagggtatcgaagcaatagggaaagtg
tacatgcatttgcctcaaactgatgctaagaaacgtatagttattacagaaactggtgaa
ttcaaagcaatagcagaatggttattggaaacggacggtacgagtttaatgaaagtgttg
agtgaaagagatgtcgatccagttagaacatttagtaatgatatttgcgagatatttgaa
gtactgggtatagaggctgtgaggaaatcggtagagaaagaaatgaatgctgttttgcaa
ttttacggcctttacgtaaactatcgccatcttgctttgctttgtgacgtaatgactgct
aaagggcatttgatggctataactcgtcacggaattaacagacaagacacaggtgctctt
atgagatgttccttcgaagaaacagtggacgttctattagatgcagcatctcatgcggaa
gtagatccaatgagaggagtatctgaaaatattatcatgggacaacttccacgtatagga
acaggatgtttcgatttgttactggatgctgagaaatgtaaagctggtattgaaatacca
atggcagtgggtgctggtgtaatgggaactgctggaatgttcttcggcagtgttgctacc
ccaagcatgagtcctcaaatgacaccttggatgggcgccacacctggttatggcgcttca
agtatgtcacctgcattgggtagtggcatgacaccaggaggagcatgcttctccccatct
ggagcatcagatgcatcaggactatctcctgcatactctgcgtattcaccacaacccgga
agtccaggaagcccaggtcctagcatgagtccatacccaatgtcaccagcaggtggcgct
tcaccaagttattcacctacttctcccgcctacttgccaacatcgccaagtataactccg
tcgagtcccaactattcacctacaagccctacttattcacccactagtccaaattactcg
ccaacgagtccaagctattcaccaacgagtccgagctattcaccgacgtcaccaagttat
tcaccaacaagcccaaactactcgccatcaccaggttattcaccgacgagtccaagttac
tcgccaactagtccaagttattcaccaacaagcccgagttactcgccaacaagttcaagc
tattcaccgacgagtccaagttactctccaacaagtccaagctattcaccaacgtcgcca
agctactcaccgagtccatcgtactcgccaacgtcaccgagttattcatcaaccagtccc
agttactcaccaaccagcccaagctattcaccgagttcaccaaattatacgcctgcctcg
ccatcttattctccaacgagtccgagttattcgccaagttctccacaatattcatcagct
agtccaagctactctccgagtagtccaaaatattctccgacaagtccgtcgtattcgcct
acgtcgccgtcgttcgctggaacctctccacagtatacaccagcaagtccgacgtattct
ccaacaagtccaacttactccccaacgagtccatcatactcacccagttcaccgcaacac
acggcgtcaggaagcacgagatattcgcctagtagtccaaattattcccctactagtcca
acatattcgcctacaagccctcaatattcaccgtcgagtactaaatactcgcctaccagt
ccaacgtatacaccaactagtccaagttactcaccaacaagcccaacctattcgccacca
gtgccagggtactcgccaacgagtcccacgtattccccggcgtcaccagcctacgaaaca
gacgattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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