KEGG T02027: MY9

Bacillus sp. JS: MY9_0054

Entry

MY9_0054          CDS       T02027

Name

(GenBank) transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

bjs Bacillus sp. JS

Pathway

bjs03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:bjs00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    MY9_0054
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bjs03400]
    MY9_0054
Enzymes [BR:bjs01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     MY9_0054
DNA repair and recombination proteins [BR:bjs03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      MY9_0054

SSDB

Motif

Pfam:

UvrB_inter TRCF DEAD Helicase_C CarD_TRCF_RID ResIII MFD_D3 UB2H RecG_dom3_C Zot AAA_14 CdvA

Other DBs

NCBI-ProteinID:

AFI26594

Position

60487..64020

AA seq 1177 aa
MDNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNL
YQAQKVTDDLTSLLEDRSVLLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA
PVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSENPVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARAM
EKIDSGLAASLKKLKADKQKEILHTNISHDKERLSEGQTDQELVKYLSYFYEKPASLLDY
TPENTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDIRLSFSFQKIVAEQKRPL
LYYSLFLRHVQHTSPQNIVNVSGRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKERT
QKLSSVLADYDIEAAVTESKKALVQGQVYIMEGELQSGFELPLMKLAVITEEELFKNRVK
KKPRKQKLTNAERIKSYSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVTYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFE
TEIDVELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLF
TVAEMKVYARQERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNQYGRQIGLGMEGKK
LKISIQTKGRSADEWLDTLLGMLKGLKNVKKQTISST

NT seq 3534 nt +upstreamnt +downstreamnt
atggacaacattcaaacctttataaaagaaagcgatgactttaaatccatcatcaacggt
ttacacgagggcctgaaggaacaactgctcgcgggtctgtcgggttccgcgcgttctgtt
tttacttctgccctggctaatgaaacgaataagcctatctttctcatcacccataactta
tatcaagcccagaaagtaacagatgatctgacttcacttctagaggatcggtctgtcctt
ttgtaccccgtcaatgaactcatttcatcagaaatcgcagtggcaagccctgaattgcgg
gcgcagcgattagatgtcattaatagattaacgaatggagaagcgccgattgtcgttgct
cctgtagctgccatcagaagaatgctgccgcctgtagaggtgtggaaaagcagccagatg
ctcattcaagtagggcatgatatcgaacctgaccagctagcgtcacggctggtagaggta
gggtatgaacggtctgatatggtatctgcgcccggagaattcagtattcgcggaggaatc
attgatatttatccgctgacttcagaaaatccggtgagaattgaactttttgacactgaa
gtcgattcaatccgcagctttaattcagatgatcagcggtcaattgagacccttacttcg
atcaatatcggtcctgcgaaggaattaattatcagaccggaagaaaaagcgcgggcgatg
gagaaaatcgatagcggtcttgctgcgagcttgaaaaaattaaaggctgacaagcaaaaa
gaaatacttcatacgaatatttctcacgataaagaacgcttgtctgaaggccagacagat
caggagctcgtgaagtatctctcatatttctatgaaaagcctgctagtttactagattat
acacctgaaaatacacttctgattttggatgaagtcagccggattcatgagatggaagaa
cagcttcaaaaagaagaagcagagtttataacaaatcttcttgaggaaggcaagattttg
catgacattcgtttgtcattcagcttccaaaaaatagtggctgaacaaaaacggcctctg
ctgtactattctttatttttgcggcatgtacagcatacgagtccgcaaaatatcgtcaat
gtgtcaggccgtcaaatgcagagtttccatgggcaaatgaacgtgctcgcgggtgaaatg
gagcgttttaaaaaatcaaatttcactgttgtgttcttaggagcaaacaaggaacgtaca
cagaaattgtcatctgttttggctgattatgatatcgaggccgccgtgacagaaagcaaa
aaagcgcttgttcagggacaggtctatatcatggaaggtgagctccaatcgggatttgag
ctgccattaatgaagcttgccgttattacggaagaagaactgttcaaaaaccgtgtgaaa
aagaagccgcgaaaacagaagcttaccaatgcagagcgcatcaagagctattctgagctt
caaattggtgattatgtcgttcatattaatcacgggatcggaaaatacctgggaattgaa
acccttgaaatcaacggaattcataaagactatttaaatattcattatcagggaagtgac
aagctttacgtccctgtagaacaaattgatcaggtgcaaaaatatgtcggctccgaagga
aaagagccgaagctgtataaattaggcggaagcgaatggaaacgggttaagaaaaaagta
gagacatccgttcaggatattgctgatgacttaattaagctctatgccgaaagagaagcg
agcaagggatacgcgttttctcctgaccatgagatgcagcgtgaattcgaatcagctttc
ccttatcaagagactgaggatcagctccgttcgattcacgaaatcaaaaaagacatggaa
agagaacgtccgatggaccgcttgctgtgcggagatgtgggctacggtaaaacagaggtt
gccatacgtgccgcgtttaaggcgatcggcgacggaaagcaggtagctctgctcgttccg
acaaccattttggcacagcagcactatgaaaccattaaagagcgcttccaggactatccg
attaatatcggccttctcagcaggttcagaacaagaaaagaagcaaacgaaacaatcaaa
ggattgaaaaatgggacggttgatatcgtcatcgggacgcatcggctgctatcaaaagat
gtcgtgtataaagacttagggctcctcatcattgatgaagagcagcgtttcggtgtaacc
cataaagaaaagatcaagcaaattaaggccaatgttgatgttttaacgctaacagcaacg
ccgattcctcgtacgctgcatatgtctatgcttggcgtaagggatctttcagtcatcgaa
actccgccggaaaaccgcttccccgtacagacgtatgttgtggaatacaatggcgctctt
gtcagagaggcaattgaacgtgagcttgcacgcgggggccaggtctatttcttgtacaac
cgggtagaggacatcgagcggaaagcggatgagatctcaatgcttgtccctgacgcaaag
gtgacgtacgcccacggaaaaatgacagaaaatgaattagaaaccgttatgctgagtttc
cttgaaggagaatcagacgttctcgtcagtacaaccattattgaaacaggtgtggacatc
ccgaacgtcaatacgctgatcgtatttgacgccgacaagatggggctttctcagctttac
cagctgcgggggcgtgtcggccgttctaaccgtgtggcgtatgcgtacttcacataccgt
cgggataaagtgctgacagaagtagctgaaaaaaggctgcaggctattaaagaattcact
gagctaggttccggttttaaaatcgcaatgcgtgacttaaccattcgcggagccgggaat
cttcttggcgcccagcagcatggcttcatcgattcggtcggatttgacctctattcccaa
atgctgaaagaggccattgaagaacgtaaaggagacacagcgaagacagagcagtttgaa
acagaaattgatgtcgagcttgatgcgtatattccagaaacatatattcaagacggcaaa
cagaaaattgatatgtataaacgctttagatctgtggcgacaatcgaagagaagaacgag
cttcaggatgaaatgatcgaccgttttggaaactatccaaaagaagtcgaatacttgttt
actgttgcagaaatgaaggtttatgcgagacaggaacgtgtcgagctgattaagcaggat
aaagacgctgtcagattgacgatctctgaagaagcaagtgctgaaattgacggacagaag
ctgtttgagcttggcaatcaatatggcagacaaatcggactgggaatggaagggaaaaaa
ctcaaaatctccatacagacgaaaggccgtagtgccgatgagtggctcgacaccttgctg
ggcatgctgaagggcttaaaaaatgtgaaaaagcaaaccatttcatcaacgtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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