KEGG   Bradyrhizobium japonicum USDA 6: BJ6T_00720
Entry
BJ6T_00720        CDS       T01848                                 
Name
(GenBank) exonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
bju  Bradyrhizobium japonicum USDA 6
Pathway
bju03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    BJ6T_00720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bju03400]
    BJ6T_00720
Enzymes [BR:bju01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     BJ6T_00720
DNA repair and recombination proteins [BR:bju03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     BJ6T_00720
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BJ6T_00720
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BJ6T_00720
SSDB
Motif
Pfam: RNase_T Exonuc_X-T_C RNase_H_2
Other DBs
NCBI-ProteinID: BAL05373
Position
complement(60216..61622)
AA seq 468 aa
MSFVFFDTETTGLKRGFDQILHFAAVRTDENLNEVARFETRSRLQPHVLPHPSALRTNGL
PIESLTDSSLPSHYTMVGDIRRTLISWSPAVFVGFNSIRFDEEMLRHALFQCLYPAYLTS
NHRNCRADALSLVMAADAVSPAQLVVPVSEEGRRTFRLQQLAAANGVAHARAHDAMSDVL
ATLELSRLVYRRSPELWQRFVRFSNKATVADFIEVEDGFVLTEFFGGQAYHTSVVCIGRD
PDQANGRLCLSLNEDMGRLAAMSDLELQVHRTQKPSPIRRFRINAAPTLTAFYDAPEHML
DGGSMGATGDRACLMKADTGLCARLVAAYMAAREPYALSPHLEERIYSGFPGPADEARIA
AFHDARWEDRLAIVQGMEDERLRWFGLRLIYFEARSVLPEPTRLEVERYLTDQMTGDGSG
CLTIDQAMAETERVLGEFASPDDLLIQYRTYLQDRLARLEAYRTRLIA
NT seq 1407 nt   +upstreamnt  +downstreamnt
atgagcttcgtctttttcgacaccgagacgacggggcttaagcgtggcttcgatcagatt
ctccacttcgccgctgttcgcaccgatgaaaacctgaacgaggtggctcggttcgagacg
cgctcgcgccttcagccacatgtgcttccccatccttcggcgcttcggacgaacggattg
ccgatcgagtcgttgactgattccagcctgccgtcgcactacaccatggtaggagatatt
cgccggaccttgatttcctggagccctgcggttttcgtcggcttcaactccatccgcttc
gacgaggagatgctgcgccacgccctcttccagtgcctatatccggcatatctgacaagt
aatcatcgaaactgccgcgccgatgcgctcagtctggtgatggccgccgatgccgtgtcg
cctgcgcaactagttgtgccggtcagcgaagaagggcggcggacatttcgcttgcaacag
ttggcggcggcaaatggcgtcgcacatgctcgggcacacgacgcgatgtccgatgtgctt
gcgacgctcgaactgagccgattggtctatcgaaggtctccggagttgtggcagcgcttc
gtgcgcttctcgaacaaagcgaccgtcgcggatttcattgaggtcgaagacggcttcgtg
ttgaccgagtttttcggcggccaagcttatcatacgtcggtcgtctgcatcggcagggat
cccgatcaggccaatggccggctttgcttgagtctcaacgaagacatgggccggcttgcc
gcgatgagcgatctcgaactgcaagttcatcggacgcagaagccaagtccgattcgtcgc
ttcaggatcaatgccgcgcccacgctgacggcgttctacgacgctcccgagcatatgctg
gatggcggttcgatgggcgccaccggagaccgggcctgtctcatgaaggcggacactggt
ctgtgcgcgcggcttgtggctgcttacatggctgcgcgcgagccctacgcattatctccg
cacctcgaagagcgcatctatagcggctttcccggtcctgctgatgaggcacgcattgcc
gcgttccacgatgcgcgatgggaggaccgcctcgcgatcgtccagggcatggaggacgag
cgactgcgctggttcgggctccggttgatctatttcgaagcgcgctcggttctccccgaa
cctactcgattggaggtcgagcgctacttgaccgatcagatgacaggcgacggttcgggc
tgcctcaccatcgatcaggcgatggcagagacggaaagggtgcttggcgagttcgccagt
ccagatgatcttctgatccaatatcgcacgtatctgcaggatcgactggcgcggcttgag
gcctatcggacacggctgattgcctga

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