KEGG T01848: BJ6T

Bradyrhizobium japonicum USDA 6: BJ6T_11730

Entry

BJ6T_11730 CDS T01848

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

bju Bradyrhizobium japonicum USDA 6

Pathway

bju03410	Base excision repair
bju03420	Nucleotide excision repair
bju03430	Mismatch repair
bju03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:bju03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:bju03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:bju03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:bju03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

384214888

NCBI-GeneID:

12144272

UniProt:

G7DPB2

Position

complement(1249709..1251397)

AA seq 562 aa
MNRFAELLDRLAYEPGRNNKLRLITGYFREVGDPDRGYALAALTGALSFKHAKPALIRDL
IASRTDEVLFGLSYDYVGDLSETVALMWPKAAMAAHNNPPPPTLTDVVTTLRTLGKTELP
KQLERWLDELDETGRWALLKLVTGALRIGISARLAKTAAAALGDKDPHEVELIWPGLSPP
YLDLFAWLERRGEKPVNRDPAPFRPVMLAHAIEDTDFAALDPADYVAEWKWDGIRVQAVA
GRDERGQITARLYSRTGEDITGSFPDLVPSLRLAGAIDGELLILREGRVQSFNVLQQRLN
RKVVSPKLIKEFPIHLRAYDLLGDDANDLRELPFAERRERLETFIGKLDDPRIDLSPTVP
FASWQALTAARADPASAGAGADADAVEGVMLKRRDAPYLPGRPKGQWWKWKRDPHIIDAV
LMYAQRGHGKRSSYYSDYTFGVWTAGEAGDELVPVGKAYFGFTDEELLQIDRFVRRNTTE
KFGPVRHVVHERDKGLVLEVAFEGLQRSPRHKSGVAMRFPRISRLRWDKPPREADRLETL
ENMLKADESLPTIKVAASADSH

NT seq 1689 nt +upstreamnt +downstreamnt
atgaaccgcttcgccgagctgctggatcgcctcgcctacgagcccggccgcaacaacaag
ctgcggctgatcaccggctatttccgcgaggtcggcgatcccgaccgcggctacgcgctg
gccgcgctgacaggcgcgctgagcttcaagcatgccaagcccgcactgatccgcgatttg
atcgcgtcgcgcacggatgaggtgctgttcgggttgagctacgattacgtcggcgatctc
tcggagacggtggcgctgatgtggccgaaagcggccatggcagcccacaacaacccgcct
cccccgacgctcacggacgtcgtcaccacgctccgcacgctcggcaagaccgagctgccg
aagcagctcgaacgctggctcgacgagctcgacgagaccggccgctgggcgctgctgaag
ctcgtcaccggcgcgctgcgcatcggcatctccgcgcggctggcgaagaccgcggctgct
gcgctcggcgacaaggacccgcacgaagtcgagctgatctggccggggctcagccctccc
tatctcgacctgttcgcctggctcgaacgccgcggcgaaaaaccggtcaatcgcgatccc
gcgccgttccgcccggtgatgctcgcgcacgcgatcgaggacacggatttcgccgcgctc
gatcccgccgattacgtcgccgaatggaaatgggacggcatccgcgtgcaggcggtggcg
ggccgcgatgagcgcgggcagatcacggcgcggctctattcgcgcaccggtgaggacatc
acggggagcttcccggacctggtgccgtcgctgcggctcgcgggcgcgatcgacggcgag
cttctgatcctgcgcgaaggccgcgtgcagagtttcaacgttttgcaacagcgcctcaac
cgcaaggtcgtctcgccgaagctgatcaaggaatttccgatccatttgcgcgcctacgat
ctgctcggcgacgacgcgaacgatctgcgcgagctgcccttcgcggaacggcgcgaacgg
ctggagacgttcatcggcaagctcgacgacccccgcatcgacctgtcgcccaccgtgccc
ttcgcaagctggcaggcgctgaccgcggcgcgcgccgatcccgcgagtgctggcgcgggg
gcggatgccgacgccgtcgaaggcgtcatgttgaagcggcgcgatgcgccttacctgccg
gggcggccaaagggccagtggtggaagtggaagcgcgatccgcacatcatcgacgccgtg
ctgatgtatgcccagcgcggccacggcaagcgctcgtcctattactccgactacaccttc
ggcgtctggaccgcaggcgaagccggcgacgagctggtgccggtcggaaaagcctatttc
ggcttcaccgacgaggagctcttgcagatcgatcgtttcgtccgccgcaacaccaccgag
aaattcggccccgtgcgccatgtcgtgcacgagcgtgacaaggggctggtgctggaggtg
gcgttcgaggggctgcagcgttccccgcggcacaaatccggcgtcgccatgcgctttccc
cgcatcagccggctgcgctgggacaagccgccgcgcgaggccgaccggttggaaacgctg
gaaaacatgctgaaggctgacgaatccctaccaacaattaaggttgcggcttccgccgac
agccattga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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