KEGG   Bifidobacterium kashiwanohense PV20-2: AH68_06445
Entry
AH68_06445        CDS       T03496                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bka  Bifidobacterium kashiwanohense PV20-2
Pathway
bka03030  DNA replication
bka03410  Base excision repair
bka03420  Nucleotide excision repair
bka03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bka00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AH68_06445
   03410 Base excision repair
    AH68_06445
   03420 Nucleotide excision repair
    AH68_06445
   03430 Mismatch repair
    AH68_06445
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bka03032]
    AH68_06445
   03400 DNA repair and recombination proteins [BR:bka03400]
    AH68_06445
Enzymes [BR:bka01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AH68_06445
DNA replication proteins [BR:bka03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AH68_06445
DNA repair and recombination proteins [BR:bka03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AH68_06445
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AH68_06445
   MMR (mismatch excision repair)
    DNA ligase
     AH68_06445
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AH68_06445
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 HHH PTCB-BRCT HHH_3 UPF0758_N
Other DBs
NCBI-ProteinID: AIZ14735
UniProt: A0A0A7I678
Position
complement(1400353..1403028)
AA seq 891 aa
MTRHDDSEQLAWDFDAPETDGGAMGTSTPVSADEGAASYAPGSEQWIAALQPTDADAMRL
DRIDVSSMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARMRCLQALEAQFPS
LDSTQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSLEELREWYDSVIRGLDWPDTKPLP
MTCEVKIDGLALNLIYHNGVLEQGLTRGDGVTGEDITLNVRTISTIPQNLAGPEEDIPEF
VEIRGEVFMRWDDFNTLNRESEDAGRAPFANPRNAAAGSLRQKDPRITSTRRLSFYAHGI
GTLQWGAKRGDGHDIVNNQSEAYELYKKWGIPVSPHNREVTTFSQILDMIDYYGEHRGDI
EHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTPV
AILKPVYVAGSTVSRTTLHNPFEVERKGVLIGDTVVVRKAGDVIPELVGPVLERREGCED
QLRRFVMPSHCPSCGAQLAPAKEGDKDIRCPNVESCPAQLTERIINLASRKAFDIEHLGD
QSAIALTNPEEDRPDSVATYAPNITEIVVAPGQEPEPYEPVEGLELPARQTPVLSSEAGL
FSLKASDLQDVRVWREAPIIEIHETVGKNGKPKKTRKRIGGSGLWHQVPAFWTTPTAARK
RKDEVDESSEYPGYDVPEDAIVVREETKVSRSGASSVQPVYIRPAENTRKMLDEMDKARH
ADLWRVLVALSIRRLGPPTARVIANTFGSLDAIERASVDELSQIDGIGPEIAESVVTWFA
SAKESGDWRGMVLEAWKAAGVGVEQAEISTLPQTLEGKTVVVTGSLIDFSRDSAKEAIIS
RGGRASGSVSKKTDWVVVGENAGAKAAKAEELGVPMLNEDQFKILLENGTV
NT seq 2676 nt   +upstreamnt  +downstreamnt
atgacaaggcatgacgattccgaacagctcgcatgggattttgacgctcccgaaacggat
ggcggcgccatgggcacgtcgacgcccgtgtcggcagacgagggagccgcctcatatgcg
ccgggaagcgaacagtggatcgccgcattgcagccgacagatgcggacgccatgcgactg
gacaggatcgacgtttcatcgatgagcgccgaagccgcggcacgattgtgggcgcgagtg
gcagcatgggtggaatccgatcagatcgcatactatattgatgatgcgccggtctcatct
gatgcggcctacgatgcgagaatgcgctgcctacaggctttggaagcgcagtttccatcc
ctcgactccacgcaatcgccgacgcatcgtgttgggggcaccttctccaatgatttcgca
tcagtgcgtcacccgtcacgcatgatgagtcttgacgatgtcttttcgcttgaggaatta
cgcgaatggtatgacagtgtcatccgaggtcttgattggccggacacgaagcccctgcca
atgacctgcgaagtgaagattgacgggcttgcgctcaatctcatctaccataatggcgtg
cttgaacagggcctgaccagaggcgacggtgtgactggcgaagatatcacactcaatgtg
cgcaccatctccaccattccacagaatcttgccgggccagaggaggatattcctgaattc
gtggagattcgcggcgaggttttcatgcgatgggatgatttcaacacgctcaacagggaa
agcgaggatgcgggacgcgcgcctttcgccaatccgcgcaacgcggccgcaggaagcctg
cgtcagaaagacccgcgcatcacctccaccagaaggctcagtttctacgcgcacggtatc
ggcacgctccaatggggcgccaaacgaggcgacggccacgatatcgtcaacaaccaatcc
gaggcgtacgagctatacaagaagtggggtataccggtctctccgcacaatcgtgaagtc
accacattcagccaaatcctcgacatgatcgactattacggtgagcatcgcggtgacatc
gagcatgcgctcgacggcattgtcgtgaaagtggacgatctggggttgcagcggtcgctg
ggcgcgacctcgcgtgcgccacgttgggccatcgcctacaagtatccgccggaggaagtc
aacacggagttgctcgacatcaccgtgcaagtgggtcgtaccggccgcgtgacaccggtg
gccattctgaagcccgtatatgttgcgggttcaacagtgtcgagaaccactttgcacaat
ccgttcgaggtggaacgtaaaggcgtgcttatcggcgacaccgttgtggtgcgcaaggca
ggcgatgtgattcccgaacttgtaggtccagtgttggagcgtagagaagggtgcgaagac
cagctgcgccgtttcgtgatgccttcgcattgcccgagctgtggggcacaactcgctcca
gccaaagagggggacaaggacatccgctgtccgaacgtggagtcctgcccggcacagtta
accgaacgcatcatcaacctggcatccagaaaggcgttcgatatcgaacatctgggtgac
caatcggccatcgcgttgacgaatccagaagaggatcgccccgattcggtggcgacctac
gcgccgaacatcaccgaaatcgtagtggcaccggggcaggagcccgaaccgtacgagccg
gtggaagggctggaactgccggcccggcaaacgccggtgttgtccagtgaggccggcctg
ttctcgctgaaagcctccgacctgcaggatgttcgcgtatggcgagaagcgccaatcatc
gaaatccacgaaaccgtcggcaagaacggtaagccgaaaaaaacgcgcaaacgtatcggc
ggatcaggcctatggcatcaggtcccggcgttttggacaactccgacagcggcgagaaag
cgtaaggacgaagtcgatgaatcctcggaatatcccggatatgacgtgcctgaggatgcc
atagtagtccgagaggaaaccaaggtatctcgttccggagcatccagcgtgcagccggta
tatatacgtcctgcggaaaacacaaggaaaatgcttgacgaaatggacaaggcacgccac
gccgacttatggcgtgtgcttgtagccctgtcgatccggcgcctcggcccgcccacggca
cgtgttatcgccaatacgttcggatcgcttgacgccatcgaacgcgccagtgtggacgaa
ctgtctcagatagacggcatcggtccggaaatcgcggaatcggtggtcacgtggttcgca
tcggccaaggaatcaggcgattggcgtggcatggtgttggaagcatggaaggctgctgga
gtcggcgtggagcaggctgaaatcagtacactaccgcagacgcttgaaggcaagacagtg
gtcgtcaccggttcgttgattgatttttcgcgtgactccgccaaagaagcgattatctcc
cgcggtggaagagcctcaggatccgtcagcaaaaaaaccgattgggtggtcgttggcgaa
aacgccggcgccaaggccgccaaggcagaggaattaggcgttcccatgttaaacgaggac
cagttcaaaatactgctggaaaacggaacggtgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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