KEGG   Cytobacillus kochii: CKF48_12160
Entry
CKF48_12160       CDS       T05194                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bko  Cytobacillus kochii
Pathway
bko03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bko00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CKF48_12160 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bko03021]
    CKF48_12160 (rho)
   03019 Messenger RNA biogenesis [BR:bko03019]
    CKF48_12160 (rho)
Transcription machinery [BR:bko03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CKF48_12160 (rho)
Messenger RNA biogenesis [BR:bko03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CKF48_12160 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA ATPase_2 NACHT AAA_25 Spore_III_AA DUF6417
Other DBs
NCBI-ProteinID: ASV67997
UniProt: A0A248TIF6
Position
2370914..2372182
AA seq 422 aa
MGLNISSLENMKLKELYEHAREYKVSYYSKLSKKELIFAILKARAEQEGYFFMEGVLEII
QSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAV
NGDDPETSKERVHFPGLTPLYPDRHMNLETKTRHISTRIMDLISPVGFGQRGLIVAPPKA
GKTMLLKEIANSITTNHPEAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIKV
AELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRR
SGTRKEELLIPKDHLDKLWAIRKSMTDSPDFAEKLMRKLKQTKSNEDFFALLSEEMKAKR
SH
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgggactaaatatttcaagtctagagaatatgaaattgaaagaactttatgaacatgca
agagaatataaagtttcttattatagtaaattatcaaagaaagaacttatttttgcgata
ttaaaagcgagagcggaacaagaaggatacttctttatggaaggtgttctagaaatcatt
caatcagaaggtttcggtttcttaagaccgattaactattcgcctagttcagaggatatt
tatatctctgcatcgcaaattcgtcgctttgatttaagaaatggtgacaaagtttctggt
aaagttcgtccgccgaaggaaaatgaacgttattttggtttgttacaagtggaagcggtt
aacggagatgatccagagacatcaaaggaacgtgttcatttcccaggtttaacgcctcta
tatcctgatcgtcatatgaatttagagacaaaaacaagacatatttcaactagaattatg
gacttaatttcaccagttggttttggacaacgtggcttaatcgtcgctcctccaaaagca
gggaaaacgatgttgttaaaagaaattgccaacagtattacaacgaatcatcctgaagca
gagcttatcgtattacttattgatgaaagaccggaagaagtaaccgatattgaacgctct
gttgctggtgatgttgttagttcaacatttgacgaagtgccggaaaatcatattaaagtg
gccgagctcgtattagagagagcgatgcgtctagttgagcataagcgcgatgttgtcatc
ttaatggatagtattacacgtttagctagagcttataacttggtcattcctccaagtggt
cgtacgttatcaggcggtattgacccagccgcattccaccgtccgaaaaggtttttcggt
gccgcaagaaatattgaggaaggcggaagcttaaccatcttagctactgctctagttgat
acgggatcacgtatggatgatgtgatttatgaagagtttaaaggaacggggaatatggaa
ttgcatcttgatcgttcgcttgcggaaagaagaattttccctgcaattgatattagacga
tctggtacacgtaaggaagaattgttgattcctaaggatcatcttgataaactatgggca
atccgtaaatcaatgactgattctcctgattttgcggaaaaactcatgagaaaattaaag
caaacgaaatcaaatgaggatttctttgccttattgagtgaagagatgaaagcaaaacgc
tcacattag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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