KEGG   Cytobacillus kochii: CKF48_22225
Entry
CKF48_22225       CDS       T05194                                 
Name
(GenBank) hypothetical protein
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
bko  Cytobacillus kochii
Pathway
bko03420  Nucleotide excision repair
bko03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bko00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CKF48_22225
   03430 Mismatch repair
    CKF48_22225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bko03400]
    CKF48_22225
Enzymes [BR:bko01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CKF48_22225
DNA repair and recombination proteins [BR:bko03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CKF48_22225
   MMR (mismatch excision repair)
    Other MMR factors
     CKF48_22225
SSDB
Motif
Pfam: UvrD-helicase AAA_19 UvrD_C_2 Viral_helicase1 AAA_30 UvrD_C SLFN-g3_helicase PhoH NACHT DEAD
Other DBs
NCBI-ProteinID: ASV69782
UniProt: A0A248TNP3
Position
complement(4419364..4421610)
AA seq 748 aa
MQERQEEQKRVDRIIHEVIKKQVAYIENRDHVQKDVKQLKTGFWDDVTVNLEEMDDVIET
FQSVKQQAELLGERERRMGMLDQYVNILSKQKDSPYFGRIDFKEDGEEKESIYIGVASLM
DENDEQFLIYDWRSPVASMYYDYTPGKAKYDTPYETIMGEMLLKRQFIIKKGKIEGLFDT
GLTIGDSVLQEVLGGHANAQMKSIVATIQKQQNAIIRNVKDDLIIVQGVAGSGKTSAALQ
RIAYLLYHYRKSLHAENIMLFSPNPLFNSYVSQVLPELGEKNMKQDTFWHFIQSKYDAKL
TIETPLDQLEFLLQENDSSEKRVQEIENKSSLSYKSSMDQYISHLLIEGMIFRDITFHNE
KWLTVDEIGEKFYSYESNISIANRLQLIQEWILSIIKKKEKAERKKAWVENEVELLDKED
YLQAYKKAQQIDNDGFMQPEVEQAYLMKMVVKRRLKPLRKQIKSFYFVDILAMYVEFLRT
SNKDDSGLEATVSGDMLYEDVVPYLYLKQQLLKEDGHTSVRHIFIDEAQDYSPFHFAYLK
ELFPHSKWTLLGDVNQTIHFHADNQSVLFSNEKATVYQLRQSYRSTKEITTFTSSLLLNN
EDIIPFNRSGEKPVIKNVDEKEALTILIDVVRRSVSLGHETIAIIARSASQSEECYRQLF
PHFNNVNLIHQKTTEFQKGITIIPSYLAKGIEFDAVVIPDGEQYKKERDRFLFYTVCTRA
MHQLVILQKSQTNPFINGANVHTYESIL
NT seq 2247 nt   +upstreamnt  +downstreamnt
atgcaagagcgacaagaagagcaaaaaagggttgatagaataatacatgaagtgattaag
aagcaagtcgcttatatagaaaatcgcgaccacgtacaaaaggatgtaaagcaattaaaa
acaggattttgggatgatgtgacagtcaacctagaggaaatggacgatgtaattgagaca
tttcaaagtgtaaagcagcaagcagaattattaggggaaagagaacggcgaatgggaatg
ctcgatcaatatgtcaacatattgtcgaaacaaaaagactcaccctattttggcagaatt
gattttaaggaagatggggaagaaaaggaatccatatatattggtgttgcctcattaatg
gatgaaaacgatgagcagtttcttatttatgattggcggtcacctgttgcgagtatgtat
tacgattacacacctggaaaagcaaaatatgacaccccttatgaaacaattatgggagaa
atgttattaaagcgtcaatttattataaaaaaggggaaaattgaagggttatttgatacg
ggtttaacgattggcgatagtgtgctgcaggaagtgttaggtggacacgcaaatgcacag
atgaaaagtattgttgctacgattcaaaagcaacaaaatgcaattattcgcaatgtgaaa
gacgatttgattattgttcaaggagtggcaggtagtgggaaaacatcagcagcattacaa
agaatcgcttacctactatatcattataggaaatcattacatgctgaaaatatcatgcta
ttctcgccaaatccgctatttaatagttatgtttctcaagtgttaccagaattgggtgag
aaaaatatgaagcaggatactttttggcacttcattcaaagtaagtatgatgcaaagctt
acgatagaaacaccgcttgatcaattagaatttcttcttcaagaaaatgattcaagtgaa
aaaagagtccaggaaattgaaaataagtcctctttatcctataaatcttctatggatcaa
tatattagccatttattaatagaagggatgattttccgtgatatcacctttcataatgaa
aaatggctgactgtcgatgaaatcggtgagaaattttattcttacgaaagtaatatctca
atcgcgaacagactgcaacttatacaagaatggatcctttctataataaagaaaaaggag
aaagcagaacggaaaaaggcatgggttgagaatgaagtagaattacttgataaagaagat
tatttacaagcatataaaaaggcacagcaaatagataatgatggctttatgcaaccagaa
gttgagcaagcgtatttgatgaaaatggttgtaaaaaggagacttaagccacttcggaaa
caaatcaaatctttctattttgttgatatacttgcaatgtacgttgagtttttacgtaca
agtaacaaagatgattcgggattagaggcaactgtatctggtgatatgctgtatgaagat
gtggtaccctatttatatttaaaacaacaattactaaaggaagatggtcatacgtctgta
cgtcatatttttattgacgaagcacaggattattcaccctttcactttgcctatttaaaa
gagttattcccgcatagtaagtggacgttattgggagatgtgaatcaaactattcacttt
cacgctgacaatcagtctgtcctttttagtaatgaaaaagctacagtttatcaattaaga
caaagttatcgttcaacaaaagagattacgacatttacttcaagtctacttttgaataat
gaagatatcattccttttaaccgaagtggcgaaaagcccgttatcaaaaatgtggatgag
aaagaagcgctaacgatactcatagatgtcgttcgtcgatccgtctcgctaggccatgaa
accattgcgatcattgctaggagtgcgagtcaaagtgaggagtgttaccgtcaattattt
cctcattttaacaatgtgaaccttatccatcaaaaaacaacggaatttcaaaaaggaatt
accattattccatcttatttagcaaaagggattgaatttgatgctgttgttatccctgat
ggtgaacaatataaaaaagagagggaccgctttttattctatactgtgtgtacgagggca
atgcatcaattagtcatcctgcaaaaatcgcaaacgaatccgtttataaatggagcaaat
gtgcacacatatgaatctatattataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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