KEGG   Bifidobacterium longum subsp. longum KACC 91563: BLNIAS_02194
Entry
BLNIAS_02194      CDS       T01845                                 
Symbol
rpoB
Name
(GenBank) rpob
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
blk  Bifidobacterium longum subsp. longum KACC 91563
Pathway
blk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:blk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BLNIAS_02194 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:blk03021]
    BLNIAS_02194 (rpoB)
   03400 DNA repair and recombination proteins [BR:blk03400]
    BLNIAS_02194 (rpoB)
Enzymes [BR:blk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BLNIAS_02194 (rpoB)
Transcription machinery [BR:blk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BLNIAS_02194 (rpoB)
DNA repair and recombination proteins [BR:blk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BLNIAS_02194 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 IF-2
Other DBs
NCBI-ProteinID: AEI98030
UniProt: F8ASF0
Position
complement(1737600..1741163)
AA seq 1187 aa
MATESTTNTTTIIARADQHDIDLHKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNER
WKARVEEDEKNGTNTVAHTSGLDEVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKE
KDYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPG
VYFDRQQDRTSDKEVFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMT
KSEIAQAFKDYPLVLDALEKETLETQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTK
RYDLARVGRYKINRKLGVEADFNDRSLHQEDIIATIKYLVALHDGAATFPGKRNGEDVDL
RVDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPV
NATIKEFFGTSQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRM
CPIESPEGPNIGLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADRDLDHVIAQ
ANQELDENGNFVQKSALARVGEEEAVDVPVSSVDYMDVSPRQMVSLGASLIPFLEHDEGH
RALMGTNMQRQAVPLIESERPLVGTGSEWRAANDSGDVIKSEKDGVVTYVSADLIRVMND
DGTTSSYKLAKFQRSNQTTCYNQRPIVHDGERVEAGSVMADGPAIQNGDLALGKNLLIAF
MPWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVAN
LDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGE
TGTVIGVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRIL
PEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHSGWDISLDPNLEAEWKKL
IPSGAEKAEPNTPVATPVFDGVKPEVLKGLLSTTLPNRDGDRLVGPDGKATLFDGRTGEP
YTKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEA
YGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVL
NAEGVAIDMKDEDDDPASSADDLGFNIGARPDAAAKEDQKAEEPEYQ
NT seq 3564 nt   +upstreamnt  +downstreamnt
ttggctactgagtctacgacgaacaccaccaccatcatcgcacgcgccgaccagcatgat
attgacctgcacaaggcgtcggatcgcgtgaacttcggttccatcaaggaacccatcgat
gtgccctacctgctgggcgtgcagaccgacagcttcgattggctgatcggcaacgaacgc
tggaaggcgcgcgtcgaggaggacgaaaagaacggcactaacaccgtggcccacacctcc
ggcctcgatgaggtcttcaacgagatctctccgatcgagaacttcgctcagaccatgagc
ctgaccttctccgatccgtacttcgaagagccgcgtcacaccgtgcaggaatgcaaggag
aaggattacacctactccgcaccgctgtacgtgaacgccgagttcgagaacggcgacacc
ggcgagatcaagtcccagaccgtgttcatgggcgacttcccgctgcagactccgcacggc
acctttatcatcggcggcaccgagcgagtcatcgtctcccagctcgtgcgctccccgggc
gtctacttcgatcgtcagcaggaccgcacctccgataaggaagtcttcggcgcgaagatc
atcccgagccgtggtgcatggctcgagttcgagatcgacaagaaggaccagccgcaggtg
cgcgtggaccgcaagcgcaagcagtccgccatcgtgttccttatggccatcggcatgacc
aagtccgagatcgcccaggcattcaaggactacccgctggtgctcgatgcactcgagaag
gaaaccctcgagacccaggacgaggcactcgttgacctctaccgcaagattcgtccggcc
gacaccccaacccccgaggccggcaagaatctgctggactccttctacttcaacaccaag
cgctacgatctggcccgtgttggccgctacaagatcaaccgcaagctgggtgtcgaggcc
gatttcaacgatcgttccctccaccaggaagacatcatcgccacaatcaagtacctggtg
gccctgcacgacggtgcggcgaccttcccgggcaagcgcaacggcgaagacgttgacctg
cgcgtggacgtcgacgatatcgatcacttcggcaaccgtcgtatccgccaggtcggcgag
ctgattcagaaccagctgcgtaccggtctgagccgtatggagcgcgtggtgcgcgagcgt
atgaccactcaggacgccgaggccatcaccccgcagtccctgatcaacatccgtccggtg
aacgccaccatcaaggagttcttcggcacttcccagctctcccagttcatggatcagaac
aacccgctgtccggtgtgacgaacaagcgtcgtctttccgcactgggccccggcggtctg
tcccgcgaccgcgcctccatggaggtgcgcgacgtgcacccgtcccacttcggccgtatg
tgcccgatcgagtctcctgaaggcccgaacatcggtctgatcggctccctggcaaccttc
ggccgcgtcaacccgttcggcttcatcgagaccccgtaccgcaaggtcgtcaacggccac
gtgaccgacgaggtcgagtacatgaccgctgaccgcgatcttgaccacgtcattgcccag
gccaaccaggagctcgacgagaacggcaacttcgtgcagaagtccgcccttgcccgagtc
ggcgaagaagaggcggtcgatgtgccggtgagctccgtggactacatggacgtctccccg
cgccagatggtctccctcggcgcctccctgattccgttcctggagcatgatgagggccac
cgtgcactgatgggtaccaacatgcagcgtcaggccgtgccgctgatcgaatccgagcgc
ccgctggtgggcaccggctccgaatggcgcgccgccaacgactccggcgacgtcatcaag
tccgagaaggacggtgtggttacctacgtgtccgccgacctgatccgcgtgatgaacgac
gacggcaccaccagctcctacaagctggccaagttccagcgctccaaccagaccacctgc
tacaaccagcgcccgatcgtccacgacggcgagcgtgtggaagccggctcggttatggct
gacggccccgccatccagaacggcgacctggccctgggcaagaacctgctcatcgccttc
atgccgtggaacggctacaactacgaggatgctgtgatcatctcccagcgcctcgtgcag
gacgacaccctctcctccatccacatcgaggagtacgagatcgacgcccgcgaaaccaag
ctgggcgccgaagagatcacccgcgacctgccgaacgtcggcgaggacgccgtggccaac
ctcgacgagcgcggcatcatccgcattggcgccgaggtcgaggccggcgacatcctggtc
ggtaaggtcaccccgaagggcgagaccgagctgaccccggaggagcgcctgctgcgcgcc
atcttcggcgagaagtcccgcgaggtgcgtgacacctccctgcgcgtgccccacggcgag
accggtaccgtcatcggtgtcaaggagatcacccgtgaggatgccgaggaggacggcgac
gagctgcccaacggcgtcaaccagatgatccgcgtctacatcgcccagcaccgtaagatc
acggtgggcgacaagctctccggccgccacggcaacaagggctgcatctcccgcatcctg
ccggaagaggacatgccgttcctggctgacggtactccggtcgacatcatgctgaacccg
ctgggtgtgccttcccgaatgaaccttggccaggtgctcgaactgcaccttggctggatt
gctcactccggttgggacatctctttggatccgaatctggaagccgagtggaagaagctg
attccgtccggtgccgagaaggccgagccgaacaccccggtcgccaccccggtgttcgac
ggtgtcaagcctgaggtcctgaagggcctgctgtccaccacgctgccgaaccgcgacggc
gaccgtctggtcggccccgacggcaaggccaccctgttcgatggccgtaccggtgagccg
tacaccaagccgatttccgttggctacatgtacatgctgaagctgcaccacctggtcgac
gacaagattcatgctcgttccaccggcccgtactccatgatcacccagcagccgctcggt
ggtaaggcccagttcggtggccagcgcttcggcgagatggaggtgtgggcccttgaggcc
tacggcgccgcctacacgctgcacgagatgatgaccaccaagtccgatgacgtcgacggc
cgcgtgcgtgtctacggtgccatcgtcaagggcgataacctgccgccggcaggcatcccc
gagtcgttcaaggtgctcctgaaggaaatgcagtccctgtccctgaacgtcgaagtgctc
aacgccgaaggcgtggccatcgacatgaaggatgaggatgacgatccggccagctccgct
gacgacctcggcttcaacatcggcgcccgccccgacgcggccgccaaggaagaccagaag
gccgaagagcccgaataccagtga

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