KEGG   Bifidobacterium longum subsp. longum JCM 1217: BLLJ_1477
Entry
BLLJ_1477         CDS       T01419                                 
Name
(GenBank) DNA-directed RNA polymerase omega subunit
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
blm  Bifidobacterium longum subsp. longum JCM 1217
Pathway
blm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:blm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BLLJ_1477
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:blm03021]
    BLLJ_1477
   03400 DNA repair and recombination proteins [BR:blm03400]
    BLLJ_1477
Enzymes [BR:blm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BLLJ_1477
Transcription machinery [BR:blm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BLLJ_1477
DNA repair and recombination proteins [BR:blm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BLLJ_1477
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: BAJ67144
Position
1751379..1751663
AA seq 94 aa
MAFGTDPTPDGLANPPIDDLMKHADSKYALAIFAAKRARQINSYFTQLNEGLLQNIGPLV
EYQNNEKPLSIAFREIDEGLLEETLGEDDANEGN
NT seq 285 nt   +upstreamnt  +downstreamnt
atggcttttggtactgacccgacacccgacggtcttgcgaacccgccgatcgacgacctg
atgaagcacgccgattccaagtacgcgctggccattttcgccgccaagcgcgcacgccag
atcaactcctacttcacgcagctcaacgagggcctgctgcagaacatcggcccgctggtc
gaataccagaacaatgagaagcccctgtccatcgccttccgcgaaatcgacgagggcctg
cttgaggagaccttgggcgaggacgacgccaacgagggcaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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