KEGG   Brassica napus (rape): 106359932
Entry
106359932         CDS       T04128                                 
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
  KO
K18195  rhamnogalacturonan endolyase [EC:4.2.2.23]
Organism
bna  Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:bna00001]
 09190 Not Included in Pathway or Brite
  09191 Unclassified: metabolism
   99980 Enzymes with EC numbers
    106359932
Enzymes [BR:bna01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.2  Acting on polysaccharides
    4.2.2.23  rhamnogalacturonan endolyase
     106359932
SSDB
Motif
Pfam: Rhamnogal_lyase CBM-like fn3_3 CarboxypepD_reg RhgB_N CarbopepD_reg_2
Other DBs
NCBI-GeneID: 106359932
NCBI-ProteinID: XP_013655004
Position
A8:16799750..16805917
AA seq 677 aa
MKNGAIVMKMARVMTQVFVLIFLLQGVHSRTSRNKSNIAKPGQNLASPPVTLKKIGLNQV
VVDNGIIQVTFSNPSGLITGIKYNGFNNVLNDKIEDRGYWDVVWYEPEKNPQTDFLKGEK
IDIINQTSEHVEISFSRTWTMARRGSIAPLNVDKRYIIRRGVSGVYMYAVLERLKGWPQV
EMDQTRIVFKLDTTKFDFMAISDNRQKVMPSDADRNINNGIAAPLAYKEAVRLMNPQNHT
LKGQVDDKYMYSMESKDNKVHGWISSDQRVGFWMITPSDEFRACGPVKQDLTSHVGPTVL
SMFTSVHYVGKEMNTAYASSEPWKKMFGPVFVYLNSPSSSDPLWTDAKRQMAAEVQSWPY
DFVKSVDYPLHHRRGTVEGQLFVTDSYKSKSKLYAEFAFVGLALPGQAGSWQTENKGYQF
WTRADKRGRFAIANVRPGSYSLYAWVVGFIGDYKYERDIIITPGKEINVGPIVYEPPRNG
PTLWEIGVPDRTAAEFNIPDPDPTLLTKLYLSNANPSQDRFRQYGLWNRYSVLYPRKDLV
FTAGVSDYKKDWFYAHVNRYSGKEKYQATTWKIVFNLKTMIKTGNYTLRMALAAATNADL
FVRVNKANSNPIFTSGLIGRDNAIARHGIHGLYRLYNIDVQRKLLRVGDNTFFLTQNRNT
SLFTGVMYDYLRLEGPY
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgaaaaacggagctattgtaatgaagatggctcgagtcatgactcaggttttcgttctg
atatttcttcttcaaggtgttcattcccgaacgtcacgaaacaaatcgaatatcgctaaa
ccgggacaaaacctcgcatctcccccggttacgcttaagaaaattggccttaaccaagtt
gtcgttgataatggtatcatccaagtcaccttctcgaatccatcaggcttaataactgga
atcaagtataatggttttaacaatgtgttgaacgataaaatcgaggatcgcgggtattgg
gatgtagtatggtatgaaccagaaaaaaacccgcaaacagattttttaaaaggagaaaaa
atcgatattataaatcaaacaagtgagcatgtcgaaatttcattttcaagaacatggaca
atggctcgacgtggctcgatagccccattaaacgttgataaaagatatattattcgacgc
ggtgtatctggagtgtatatgtacgctgtgttagagaggttaaaaggctggccgcaagtg
gagatggaccaaactagaattgtcttcaagcttgacacaacaaaattcgattttatggct
atatcagataatcggcagaaagttatgccttctgatgcagatcgaaatatcaacaatggc
attgccgctccattggcttacaaggaagcggttcggttgatgaatccacaaaatcacacg
cttaaagggcaggttgacgataagtatatgtactcgatggaaagcaaggacaacaaagta
catggttggatctcttctgaccaacgtgtcggcttctggatgattactcccagcgatgag
ttccgtgcttgtgggcccgtcaaacaagatctcacttctcatgttggacccaccgtactt
tctatgtttacaagtgtacattacgtgggaaaagaaatgaatacagcttatgcaagcagt
gagccgtggaagaaaatgttcggtcctgtttttgtttatctcaattctccctcctctagt
gatcccctttggacggatgctaaacgacagatggctgccgaggttcaaagctggccttat
gacttcgtgaagtcagttgattaccctcttcaccaccgaagaggaacagtcgagggtcaa
ctatttgtcacggacagttacaaaagcaagtcgaagttatacgcggagtttgcttttgtg
ggtttagcactacctggtcaagctggttcatggcaaaccgaaaacaagggatatcaattt
tggacacgagcagacaaaagggggaggttcgcaatagcgaatgtgagaccaggaagttat
agcctctacgcatgggttgtcggatttattggagattataaatacgagcgcgacattatc
atcacaccaggcaaggagataaacgtaggaccaatagtgtacgagccgccaagaaatggt
ccgacgctgtgggaaatcggggtaccggatcggaccgcagcagaattcaatattccagat
ccggatccaacccttttgaccaaactctatcttagtaacgcaaatccttctcaagacaga
tttagacaatatggtctatggaatcgttacagtgttttgtatcctcgaaaagatcttgtt
tttactgctggagtaagtgactataaaaaagattggttctatgcacatgtcaacagatat
tctggaaaagagaaatatcaagcaacgacatggaaaatagtgtttaatttaaaaacaatg
attaaaacaggaaattacacacttcgaatggctttggctgcagccacgaatgcggattta
tttgttcgggttaacaaagctaattccaatcctattttcacgagcgggttaataggtcgg
gataacgcgatcgctaggcatggaattcatggtctatacagattgtacaatatcgatgtt
caaagaaagttgcttagggttggtgataatacattttttcttactcaaaatcggaatact
agtttgtttactggtgttatgtacgactatcttcgtttggaaggtccatattaa

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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