KEGG   Brassica napus (rape): 106367212
Entry
106367212         CDS       T04128                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46 isoform X1
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13]
Organism
bna  Brassica napus (rape)
Pathway
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106367212
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bna03041]
    106367212
   03009 Ribosome biogenesis [BR:bna03009]
    106367212
Spliceosome [BR:bna03041]
 Complex A
  U1 snRNP components
   U1 related factors
    106367212
 Complex B
    106367212
Ribosome biogenesis [BR:bna03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    106367212
SSDB
Motif
Pfam: DEAD Helicase_C ResIII WW ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 106367212
NCBI-ProteinID: XP_022554728
Position
A2:1486406..1490254
AA seq 679 aa
MAATATASTIRYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPPGLAPPKPSPA
PPVSSSVQAQQQPSSGFSSGKDEDKYTKGSDGPKTDSGSRFSEASRSGPVNSSNAASGLG
NASSGGSSAVVPPPSAAAIEKMSPEAYCRRHEITVTGGQVPPPLMSFEATGFPPELLREL
YGAGFSAPSPIQAQSWPVAMQNRDIVAVAKTGSGKTLGYLIPGFMHLQRVRNDSRMGPTI
LVLSPTRELATQIQAEALKFGKSSRISCACLYGGAPKGPQLKEIERGVDIVIATPGRLND
ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIA
SDLLSSPAQVNIGNVDELVANKSITQTIEVIPPMEKQRRLEQILRSQEPGSKIIIFCSTK
RMCDTLARNLTRTFGANAIHGDKSQQERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRV
VVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGASQKVPQEVR
ELATRGGGMNKFRRWGTPSGGGGGGGGYGDSGYGGRGGGRGDSGYGGRGDSGYGGRGGSS
YGGRGDSGYGGRGDSGYGGRGGSGYGGRGGGDSRDSSGRGSGWGRERSRSPERFNRAAAG
PSTSSPPRSFHEAMMMRQK
NT seq 2040 nt   +upstreamnt  +downstreamnt
atggctgctacagctactgcttcgacgattcgttacgcgcctgaggatcctaacctccct
aagccgtggaaaggtcttgtggatagcagaaccgggtacttgtacttttggaaccctgag
accaatgttactcagtacgagagacctcctggtttagctcctcccaaaccttctcctgct
cctcctgtaagctcttcggttcaggctcagcaacaaccttcctctgggttcagttctgga
aaggatgaggataagtatactaagggcagtgatgggcctaagactgactctggatcaagg
ttcagtgaggcaagcagaagtggacctgtgaattcaagtaacgctgccagtggactaggg
aatgcttcgtctggtggatcgtctgccgtagtgcctcctccttcggctgcagcgattgaa
aaaatgtctccagaggcttattgccgccgccatgaaattactgtcactggaggccaagta
ccaccacctctaatgtcttttgaagccactggtttccctccagagcttctgcgggagtta
tacggtgcagggttctctgctccaagtccaatccaagctcagtcatggccagttgcgatg
cagaacagagacattgtagccgttgctaaaacaggctctgggaaaactctcggttacttg
attccaggcttcatgcatctccagcgtgtccgcaatgactcgagaatgggcccaacgatc
ttggtgctgtcacctactagggagctagccacacagatccaagccgaagctttgaagttt
gggaagtcgtcaagaatctcctgtgcctgtttgtatggtggagcaccaaagggtcctcag
ctgaaggaaatagagagaggtgtcgatatcgtcattgcaacccccgggagattaaatgat
atccttgagatgaagagaatcagtcttcaccaagtgtcttaccttgtgctggacgaggct
gatagaatgctggacatgggattcgagcctcagatcaggaagattgttaacgaggttccc
actaagcgtcaaaccctcatgtacacagccacgtggcctaaagaggtcaggaaaatcgcg
tctgatctgctttctagccctgcgcaagtcaacatcggtaacgtcgatgagctcgtagcc
aacaagtctattactcagactattgaagtgataccaccgatggagaaacaacgaaggttg
gagcagatactgcgatctcaggagccaggctccaagataataatcttctgttcgaccaag
aggatgtgtgatactctcgcgaggaacttgacgcggacgtttggagctaacgctatacat
ggagacaagtctcagcaagagcgagatgatgtgctgaatcagtttaggagtgggaggact
cctgttctcgttgcaacagacgtagctgctcgtggactcgatgttaaagacatcagggtg
gtggtgaactatgatttcccaaatggagttgaggattatgttcataggatcggaagaacg
ggaagagctggagcgaccggtttagcttacactttctttggggaccaagatgcaaaacat
gcctcggatctgatcaagatcttggaaggagcaagccagaaagtccctcaggaggtccgt
gagttggctactcgcggtggtggtatgaacaagttccgccgctggggtacaccttctggt
ggtggtggtggcggcggcggctatggtgattctggttatggtggtcgtggtggtggccgt
ggtgattccggttatggtggtcgtggtgattctggttatggaggtcgaggtggttccagt
tatggtggtcgaggtgattccggttatggtggtcgaggtgattctggttatggtgggcgt
ggtggttccggttatggtggacgtggtggtggtgattcacgtgacagcagtggtcgtggc
tcaggatggggaagagagagaagccgtagtcctgagagattcaacagagctgctgctgga
ccgtccacttcctcaccgcctcgcagctttcacgaggctatgatgatgagacagaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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