KEGG   Brassica napus (rape): 106390100
Entry
106390100         CDS       T04128                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 34
  KO
K13025  ATP-dependent RNA helicase [EC:3.6.4.13]
Organism
bna  Brassica napus (rape)
Pathway
bna03013  Nucleocytoplasmic transport
bna03015  mRNA surveillance pathway
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106390100
  09122 Translation
   03013 Nucleocytoplasmic transport
    106390100
   03015 mRNA surveillance pathway
    106390100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106390100
   03041 Spliceosome [BR:bna03041]
    106390100
   03009 Ribosome biogenesis [BR:bna03009]
    106390100
   03012 Translation factors [BR:bna03012]
    106390100
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     106390100
   mRNA cycle factors
    Stress granule specific factors
     106390100
Spliceosome [BR:bna03041]
 Complex C
  Other components
   EJC/TREX
    106390100
Ribosome biogenesis [BR:bna03009]
 Eukaryotic type
  90S particles
   Helicases
    106390100
Translation factors [BR:bna03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    106390100
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_30 AAA_19 Helicase_RecD AAA_22 CMS1 DUF3638 CbiA Flavi_DEAD SWI2_SNF2
Other DBs
NCBI-GeneID: 106390100
NCBI-ProteinID: XP_013685945
UniProt: A0A816IHR9
Position
C3:complement(71144781..71147319)
AA seq 404 aa
MAAAKGSSDWRSVGGALDDENLVFETTKGIKPIASFDEMGMNDKVLRGVYDYGFKKPSEI
QQRAVMPILKGRDVIAQAQSGTGKTSMIAISVCQIVNTSSRKIQVLVLSPSRELASQTEK
TIQAIGVHTSIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKSVKLL
ILDESDEMLSKGLKDQIYDVYRSLPHDIQVCLISATLPQEILEMTNKFMTDPVRILVKRD
ELTLEGIKQYYVDVGEEEWKFDTLCDLYGRLVINQAIIFCNTRQKVDWLTEKMRSSNFIV
SSMHGDKRQKERDEIMNQFRSFKSRVLIASDVWARGIDVQTVSHVVNYDVPNNPELYIHR
IGRAGRFGREGVAINFVKNSDTKTLRDIERYYGTKIREMPADLA
NT seq 1215 nt   +upstreamnt  +downstreamnt
atggcagcagcgaaaggaagcagcgactggagaagtgtaggaggagcgttggatgacgag
aatcttgtcttcgaaacgaccaaagggatcaaaccaatagcgagtttcgacgagatgggg
atgaatgataaagttcttcgcggagtctacgactacggtttcaagaaaccttctgagatt
cagcagagagctgtgatgcctatcctcaaaggacgcgacgtcatcgctcaggctcagtcc
ggtacgggcaaaacctccatgattgccatctccgtctgccaaatcgtcaacacttcctcc
agaaagattcaagtgttggtcttgtctccatcaagggaactggcttcacaaacagagaag
acgatacaggccattggagtacacaccagtattcaggcacatgcctgcatcggtggtaag
agcattggagaagacatcaagaagctggagcgtggtgtgcacgctgtgtccgggacgcct
ggtcgagtctacgatatgataaagagagggagtttacaaaccaaatccgtcaagcttttg
atcttggatgaatcagatgaaatgctgagcaaaggtttgaaagaccagatctacgacgtt
tacagatctcttccacacgatattcaggtttgcttgatatctgctactcttcctcaagag
attctggagatgacaaataagtttatgacggaccctgtgaggatacttgtgaagcgtgac
gagttgactcttgaagggattaaacaatattacgttgatgttggggaagaagagtggaag
ttcgatacactttgtgatctttatgggaggcttgttatcaatcaagcaatcatcttctgt
aacacaagacaaaaggtggattggctaactgagaagatgaggagtagtaactttatagtc
tcgtcaatgcatggagacaagcgtcaaaaggagagagacgaaatcatgaaccagttccgg
tcttttaaaagccgtgttttaatcgcatcagatgtatgggcacgagggattgatgttcag
acagtttctcatgtcgtaaactatgatgtaccaaataacccggagctttacatacatcgc
attggacgagctggtcgttttgggagggaaggtgttgcgattaactttgtgaaaaactct
gacacaaagactcttcgtgacattgagaggtactacggtactaaaatccgggagatgcct
gctgatcttgcctaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (29)   

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