KEGG   Brassica napus (rape): 106393558
Entry
106393558         CDS       T04128                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
bna  Brassica napus (rape)
Pathway
bna03022  Basal transcription factors
bna03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106393558
  09124 Replication and repair
   03420 Nucleotide excision repair
    106393558
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bna03021]
    106393558
   03400 DNA repair and recombination proteins [BR:bna03400]
    106393558
Transcription machinery [BR:bna03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     106393558
DNA repair and recombination proteins [BR:bna03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     106393558
SSDB
Motif
Pfam: BSD PH_TFIIH
Other DBs
NCBI-GeneID: 106393558
NCBI-ProteinID: XP_013689707
Position
A2:9942673..9947366
AA seq 593 aa
MSDWQVKYKSSLKDRGTEGILKLREGILLFVPNDPTSDSKLKVLTPNIKSQKYTKEGSKK
PAWLNLSNKQGDSHIFEFQNYQDMHACRALITKALAKCEEEQPKKPAAVLTSAEQLSIAD
LELRFKVLRENIELQRLHKEFVETKVLTEDEFWATRKKLLGKDSIRKSKQQVGLKSMMVS
GIKPSTDGRTNRVTFNLTSEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLY
STKNTAVAAAEAAEDEELAVFLKPDEILAQEARQKIRRVDPTLDMEADQGDDYTHLMDHG
IQRDGTMDVVEPQNGQFRRSLLQDLNRHAAVVLEGRNIDVDSENTRSVAEALARVKQVSK
ADGETTKDANQERLARMSRLAEMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVVNEPRGA
GTLKRNVHEAYGSLKESILEIRTKGLRDPLIKPEVAFEVFRSLTQTISTAKNIIGKNPRE
SFLDRLPKSTRDEVLHHWTSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNSYSQLEAM
KESVQSELRHQLSLLVRPMQQALDAAFQHYDADLQRRTAKSARGSAGEANGSV
NT seq 1782 nt   +upstreamnt  +downstreamnt
atgtcggactggcaagtgaaatacaagagctctctgaaggatcgaggaactgagggaatc
ctcaaattaagggaagggatactgctcttcgttccaaatgatcccacctctgattcaaag
cttaaagtcctcactcccaacatcaaaagtcaaaaatatactaaagaaggatcaaaaaaa
cctgcttggctcaatctctccaacaagcagggagacagtcatatctttgagtttcaaaat
tatcaggacatgcatgcttgccgtgctctcatcactaaggccctagccaaatgtgaagag
gagcagcctaagaaaccagctgctgtcttgacctctgctgagcaactcagtattgctgac
ttggagctacgcttcaaggttcttcgagaaaatattgagttgcagagattgcataaggaa
tttgttgaaactaaagtcctgactgaagatgaattctgggctactaggaagaaactactg
ggtaaagattccatcagaaagtcgaagcaacaggtcggactgaagagcatgatggtttcc
ggcatcaaaccttctactgatgggcggactaatagggtgacgttcaacttaacctctgag
ataatttttcagatttttgctgagaagccagctgttcggcaggcattcattaattatgtt
ccgagtaagatgacagaaaaagacttctggacaaaatattttagagcagaatatctttac
agcaccaaaaatacagcggtagctgcagcagaagctgctgaggacgaggaactcgctgtc
tttctaaagcctgatgagatattggctcaggaagctcgtcaaaagatcagacgggttgat
ccaactcttgacatggaagctgaccagggagatgactacactcatcttatggaccacggg
atccagcgagatggcaccatggatgttgttgaacctcagaatggtcagtttagaagatca
cttttgcaagatcttaatcgtcatgctgctgttgtattggaaggcaggaacattgatgtt
gattcagaaaacacaaggagtgttgcagaggcgctcgcacgggttaaacaagtaagcaaa
gctgatggtgaaaccactaaagacgctaatcaggagagattggcgagaatgtcccgtttg
gctgaaatggaggatcttcaagcaccgcagaatttcccgttagcaccgctctctatcaag
gaccctcgtgattactttgaatctcaacaaggaaacgtcgtcaatgaacctagaggagca
gggacattaaagagaaatgttcatgaagcttacggatcgttaaaagaatccattttggag
attagaacgaaagggttaagggatccgttgattaaacctgaagttgccttcgaggttttc
aggtcattaacccaaactatctccaccgccaaaaatattatcgggaagaacccgcgagag
agctttctggacagattgccgaagtccactagagacgaggttttacatcattggacatca
atacaagaattacttaaacatttttggtcatcttacccgataacaaccacatatcttcat
accaaagtagggaagctgaaggatgcaatgtccaatagttattcacaactcgaggcaatg
aaagagtcggtgcaatcggaactccgccatcagctttctctactagttcgtccaatgcaa
caggctcttgatgctgcgttccaacactacgatgctgacttgcagagaagaaccgctaag
agcgccagaggtagcgccggcgaagcaaacgggtctgtttag

DBGET integrated database retrieval system