KEGG   Brassica napus (rape): 106400753
Entry
106400753         CDS       T04128                                 
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
bna  Brassica napus (rape)
Pathway
bna03013  Nucleocytoplasmic transport
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106400753
  09122 Translation
   03013 Nucleocytoplasmic transport
    106400753
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106400753
   03041 Spliceosome [BR:bna03041]
    106400753
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     106400753
Spliceosome [BR:bna03041]
 Complex C
  Other components
   EJC/TREX
    106400753
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106400753
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 106400753
NCBI-ProteinID: XP_048606804
Position
C3:complement(55551965..55564845)
AA seq 1802 aa
MSLPLLECKYVTEEFVREGKSGSYGSKLPSSVPMLRFLYELCWVLVRGELPIQSCKVVLE
KVKFLDDPSKEELASCFADVVTQIAQDLTMSGDHRSRLTKLAKWLVESQTVPQRIFQERC
EEEFLWEAEMVKIKAQDLKGKEVRLNTRLLYQQTKFNLLREESEGYAKLITLLCRGSAGS
SHNASAATMGIIKSLIGHFDLDPNRVFDIVLDCFELEQDYDTFLNLIPIFPKSHASQILG
FKFQYYQRLEVNSPVPSGLYKLTALLVKKNFISLESIYAHLLPKDEEVFEDYNTYSAKRF
EEANNIGKINLAATGKDLMEDEKQGDFKVDLYAALDMETEAVAERIPELENNQTLGLLDG
FLSVDDWGHANIMFERLAPLNPVAHNHICDGLFRLIEKRITHAYRIARQTRFQNSSSAGS
EKIAHAANTSASKTCSDLKEVFQMLVTVGPYLYRNTQLLQKICRLLRVYYLSALDLVRSS
DGSSNQEGSADEIKHLKEARFRVEEALGTCLLPSLQLIPANPAVGHEIWEVMSLLPYEAR
YRLYGEWEKDDERNPLLLAARQVAKLDTRWILKRLAKENLKPLGRMVAKLAHANPMTVLR
TIVTQIEAYRDMIAPVVDAFKYLTQLEYDVLEYVVIERLVQSGRAKLKDDGINLSDWLQS
LASFWGHLCKKYPSMELRGLFQYLVNQLKRGQGIELVLLQELIQQMANVQYTENLTEDQL
DAMAGSETLRYHATSFGMTRNNKALVKSSNRLRDSLLPNDEPKLAIPLLLLIAQHRSLVV
VNADAPYIKMVTEQFDRCHGILLQYVDFLSSAVTPATAYAQLIPSLEELVHTYHLEPEVA
FLVFRPVMRLFKCRRNGDISWPLDSGESIDADSDVSKSESSMILDVGTSEKAVTWSDVLD
TVRTMLPSKAWNSLSPDLYATFWGLTLYDLHVPRSRYESEISKQHAALKTLEEVADNSSS
AITKRKKEKERIQESLDRLTGELKKHEEHVASVRRRFSREKDKWLSSCPDTLKINMEFLQ
RCIFPRCTFSMADSVYCAMFVHMLHSLGTPYFNTVNHIDVLICKTLQPMICCCTEYEVGR
LGRFLFETLKIAYHWKSAESIYESECGNMPGFAVYYRYPNSQRVTFGQFVKVHWKWCAKI
TKLLIQCLESNEYMEIRNALIMLTKISGVFPVTRKTGYNIEKRVAKIKNDEREDLKVLAT
GVAAALSARKSSWVTDEEFGMGYLELKAPPVHTPKHTPSQNGLVGGESTGGRSTANQQPE
SGGKDQLSKSKIPDGRTENMPSKSDQGHPKSKGGNPSDAQPSVSKKPVDQKETDESPKIS
DENPVKAGSKYSEAELKPSSKRGASATSMNKSTKQDFGKDDGKSGKAAGRTSAADNDVIY
LGSRQASLTKASPSTAGNGSLATGSSKVKDDGAEATDTQKQSTRTAHSPRHEISTSSRSS
DRLQKRANAVEDSDRTSKRRKADSEHKEHDSEARPSDRDRSAEARVDLNKTPSDDQSTQR
DQDRAKDKGNERQDRDHRERVERSDKTRADDVVKARDKSMERYGRERSVERGLDKGTTRS
YDRNKDERSKDDRSKLRHSDASLEKAHGDDRSISQGLPPPPPLPPNIVPQSMASKEEPER
RAGGTRHSQRLSPRHDERERRRSEENTSVSVEESKRRRDDDFRDRKREDRETIILKGEER
EREREREREKSIPLKDDFEASKRRKIKRDQQVSSAEPGEYSPMPHQSSLSMGMGPSSYEG
REQRKSSSSMIQHGGYPEEPSIRLLGKEASSKMARRDPDPMYDREWEEDKRQRAERKRRD
RK
NT seq 5409 nt   +upstreamnt  +downstreamnt
atgtctcttccgctacttgagtgtaagtacgtgacggaggagttcgttcgcgaagggaag
agtggcagctacggttccaagctgcccagctccgtaccgatgcttcgtttcctatacgag
ctctgttgggttttggttcgtggcgagttgccgattcagagctgtaaggtagtgttggag
aaggtgaagtttttggatgatccatcgaaggaagagttagcttcttgttttgcggatgtt
gtgactcagatagctcaagatcttaccatgtcgggggatcaccgttctcgcctaacaaaa
ttggcaaaatggcttgtggaatcacagacagttcctcaaaggatcttccaagagcgttgt
gaggaggagtttttatgggaagctgaaatggttaaaataaaagcccaagatttgaagggg
aaagaggtgcgattaaacactcgtcttctgtaccagcagacaaagttcaacttactccgt
gaagaaagcgagggatatgccaaattgattacccttttatgccgaggatctgcaggttct
tcgcataatgcatcagcagcaactatgggaattatcaagtcattaattgggcattttgac
cttgatccgaaccgtgttttcgacattgttttggattgctttgaacttgaacaagattac
gacacgtttctcaatctaattcctatctttcccaagtctcatgcttcacaaattcttgga
tttaaatttcaatactatcagagattggaggtgaatagtccagttccatctgggctctat
aagcttacggccttgctagtaaagaagaatttcatcagtcttgaaagcatatatgcacat
ctgctacctaaggacgaagaagtttttgaggattataatacttattctgcaaagcgtttt
gaagaggccaataatattggaaagataaatcttgctgctactgggaaggatcttatggag
gatgagaagcaaggagatttcaaagttgatctctatgctgctttagacatggaaactgaa
gctgttgctgagcgaataccagagcttgaaaataatcagactctgggcctccttgatggt
ttcctctctgtggacgactggggtcatgccaatatcatgttcgagcgtcttgcgcctctt
aatccggtggctcacaatcatatatgtgatggcttgtttaggcttatagagaaaagaatt
actcatgcttatcgcattgcccgtcagacacgttttcaaaattcttcttctgcgggttca
gaaaagattgcccacgctgctaatacaagtgccagtaaaacttgttcagatcttaaagaa
gtgtttcagatgcttgttacagttggaccctacttgtaccgtaatacacaactgctgcag
aagatttgtagactattaagggtttactacttgtcggccttagatcttgttcgcagtagt
gatgggtcatcaaatcaagaaggtagtgcagatgaaatcaagcacctgaaggaagctagg
tttagagtggaagaagcccttggaacatgccttctgccatcgttacagttaatacctgca
aatccagcagttggtcatgagatttgggaagtgatgagtctccttccatatgaggctcgt
tatcgcttatatggtgagtgggaaaaggacgatgagcggaatcctttgctgttggcagca
aggcaagtggctaagttggacactagatggattctgaaacggcttgcaaaagaaaatttg
aagccgttaggaaggatggtggcaaaactagcgcatgccaatcccatgacggtgcttcgg
acaattgtgactcagattgaagcatacagagatatgattgctcctgttgtagacgccttc
aaatacttgacacagctagagtatgatgtcctggaatatgtcgtgattgaaagactggtg
caaagcggacgagctaaactcaaagatgacgggattaatttatcagactggcttcaatcc
ttggcttcattttggggtcacctgtgtaagaagtatccatcaatggagttaaggggtctt
ttccagtatctcgttaaccagttaaagagaggccaagggattgagcttgttcttctccag
gaactgatccagcagatggcaaatgtacaatacactgagaaccttactgaagatcagttg
gatgccatggcaggaagtgagacattacgttatcacgcaacatcctttggcatgacacgg
aacaacaaggcacttgtcaaatcatccaaccgtctacgagattcgttactcccaaatgac
gaaccaaagctagctatcccccttttgttacttatcgcccagcatcgttcactggttgtg
gtaaatgcggatgcaccctatattaagatggtcactgaacagttcgacagatgtcatgga
attctcctccaatacgtggactttctttctagcgctgttactcccgctactgcttatgct
cagctcataccttcgcttgaagagcttgttcatacataccatcttgagccagaggtcgct
tttttggtatttcgacctgtgatgaggctctttaagtgtcgacggaatggtgatatttca
tggcctttggacagtggggaatctattgatgcagattccgatgtatcaaaatctgagagt
tccatgattcttgatgtcggcacatctgaaaaagctgtaacgtggtctgatgttcttgat
acagtaagaacaatgctgccctcgaaagcttggaatagtctgtcgccagacctctacgct
acattttgggggcttactctgtatgatctccatgttcccagaagtcgttatgagtctgag
atatctaaacaacatgctgcccttaagactctggaagaggttgctgataattccagctct
gcaattacgaagagaaaaaaagagaaggaaaggattcaagaatctcttgatcgtctaacc
ggtgaactgaaaaagcatgaagaacatgttgcctctgtccgtagaaggttttcacgtgaa
aaggataaatggttgagctcctgtcctgatactttgaagatcaatatggagttcctgcaa
cgttgtattttccctcgttgcacatttagcatggcagattctgtgtactgtgctatgttt
gtacatatgctccactctcttggaacaccctattttaacacagtcaaccacattgatgta
ctgatatgtaaaacgctacaaccgatgatctgctgctgcactgaatacgaagttggacga
cttgggaggtttttattcgagaccttgaagattgcataccactggaagagcgcagaatca
atctatgaaagtgaatgcggaaacatgcctgggtttgctgtttattatagatacccgaac
agccagcgtgtcacatttggacaatttgtgaaggtacattggaaatggtgtgcaaaaatc
acaaagcttttgatccagtgtctggagtcaaacgagtacatggagattcgtaatgccctt
attatgctaacaaaaatatctggtgttttcccagttactcggaaaactggatataatatc
gagaaacgggtagcgaaaattaaaaatgatgagcgagaggaccttaaggtcttggcaact
ggtgttgccgctgctctatctgcaagaaaatcatcatgggttactgacgaagaatttggc
atgggttaccttgaactaaaggctccgccagtacatactcctaaacatactccttcccag
aatggcttggtaggtggtgaatcaactgggggaagatctactgctaaccagcagcctgag
tctggcggcaaggaccagttgtcaaaaagtaaaataccagatggaagaacggaaaatatg
ccttcaaaatctgatcaaggacatccaaaatcaaagggaggcaatccatcggatgcccaa
ccatctgtgtctaagaaaccagtggaccaaaaggaaacagatgaatcacccaaaatatct
gatgagaatcctgtcaaagctggttcaaagtactctgaagccgagttaaaaccttcttct
aaacgaggtgcatcggctacatcgatgaacaaatcaacaaagcaagattttggaaaagat
gatggaaagtccggtaaagctgctggaagaacatccgcagctgacaacgatgttatttat
ctggggagcaggcaagcaagtttgaccaaagcttctcccagcacagcaggcaatggtagc
ttagctactggttcttccaaagtgaaagatgatggtgctgaagctacagatactcaaaag
caatctactcggactgctcattcccctaggcatgaaattagcacttcttcgaggtcgagt
gataggttacagaaacgagctaatgctgttgaagatagtgacagaacaagtaaacgccgt
aaagcagactctgagcacaaagagcatgacagtgaggctcgaccgagtgatagagacaga
tcagcagaggctagggtggatttaaacaaaacacccagtgatgaccaaagcacccagaga
gatcaagacagggcaaaggataagggtaatgaaagacaggacagggaccacagagaaaga
gtcgagcgttctgataaaactcgtgcagatgatgtggtaaaagcacgagataaatccatg
gaacgctatggtagagagcgctcagttgagagggggcttgataaaggaacaactaggagt
tacgatagaaacaaggatgaaagaagcaaagatgacagaagcaaattgcgtcatagcgac
gcgtcacttgagaaagctcatggtgatgatcgttctatttctcaaggcttacccccacct
ccaccgctacctcctaacatcgttccacaatctatggcctcgaaagaagaacccgaaagg
agggccggaggtacaaggcattcccagaggctttctccgaggcatgatgaaagagagaga
cgacgctctgaagagaatacatcagtttctgtggaagagtcgaaacgaagaagagatgac
gattttcgtgaccgaaagcgagaggaccgagaaaccatcatcctgaagggagaagaaagg
gaaagagagagggaaagagaaagagaaaaaagtatcccattgaaagatgattttgaagcc
tccaagagaaggaagataaagagggatcaacaggtctcatctgcagagccaggggaatac
tctccaatgccacaccagtcatctttgtcaatgggtatgggaccatcatcgtacgaaggc
agagagcagcgaaagagcagtagtagtatgattcaacatggaggttatcctgaagagcca
agcatcagacttcttggcaaagaagcttccagcaagatggctcgtcgtgatcctgaccca
atgtatgatcgtgagtgggaagaagacaagaggcagagagcagaacggaagcggagagat
cggaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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