KEGG   Brassica napus (rape): 106419343
Entry
106419343         CDS       T04128                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]
Organism
bna  Brassica napus (rape)
Pathway
bna03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106419343
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106419343
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     106419343
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N dsrm AAA_22 T2SSE ATPase nSTAND3 AAA_19 AAA_16 Myosin_head PhoH
Other DBs
NCBI-GeneID: 106419343
NCBI-ProteinID: XP_013715563
Position
A10:complement(18625118..18630619)
AA seq 1157 aa
MRFTKRISFFLWQATKLPTRSLPRNPSLCRSYHIVGAPISSGDVVKGLSYGQICRRFIGY
TAEQFSDDEYECEFEEHKASSSVANVDEWKWKLGILLANDSEREIVSRDKRDRRDYEQIS
NLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLLQEHLDR
QQLNSGKANESEADSQPPKQTEELPDESSDAFLDGSVMEKVLQRRSMRMRNMQRAWQESP
EGRTMLEFRKSLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGA
FCNIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMRGKNTQLLFCTSGILLRR
LLSDRNLNGITHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLVLMSATLNAELFSNYF
GGAPTIHIPGFTHPVKAHFLEDVLEMTGYKLTSFNQVDDYGQEKTWKTQKQLMPRKRKNQ
ITSLVEEALSKSTFESYSSRTRDSLSSWMPDCVGFNLIEAVLCHICRKERPGAVLVFLTG
WDDISSLRDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKIVLATNMAEA
SITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLLPGECYHLYP
KCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIAGFLSAALQAPEPLTVQNAIGFLKM
IGALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFHCFDPILTIVSGLSVRDPFLLPQE
KKDLALSAKLRFSAKDYSDHMALVRAFEGWKNAEREGSAYEYCWRNFLSAQTLQAIHSLR
KQFNYILKEAGLVHDDSALNNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDG
QVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGALSTGVQVGH
LKMLDGYIDFFMDPNLADSYVKLKEELNKLLQKKLEDPSVDIHKEGKYLMLAVQELVAGD
QCEGRFVFGRDTKRATSQPQLAGENNKLSKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKT
NEFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSTDQYSGDADSPPDVTD
NMLKLLGGKRRRRSKGK
NT seq 3474 nt   +upstreamnt  +downstreamnt
atgcgtttcaccaaacgaataagcttcttcctgtggcaggccaccaagctccccactcgc
tctctaccgagaaacccatctttatgcaggtcttatcatatcgttggtgctccgatctct
agtggtgatgttgtcaaaggtttgtcctacggccagatatgtcgtcgtttcatcgggtac
actgcggaacagttctctgatgatgagtacgagtgtgaattcgaggaacataaggcttca
tcttctgtggccaatgttgatgagtggaaatggaagttagggattctgttggctaatgat
agcgagcgagagattgtttctagagacaaaagagaccgaagggattatgagcagatctca
aatcttgccaagagaatgggactctacagtgagatctatggaaaagtggttgttgcaagc
aaggttcctcttcccaactacaggccagatttggatgataagcgaccacaacgggaggtg
gtacttcctctgagtttgcagagaagggtagagggactactccaggaacaccttgataga
cagcagctaaactcaggaaaggctaatgaaagtgaagctgattctcagcctcctaagcag
actgaagagcttcctgatgaaagctctgatgcgtttctcgatggttctgttatggagaag
gtgcttcagaggaggagtatgcggatgcgcaatatgcagagagcctggcaggaatcacct
gaggggcgtacaatgctggaattcagaaaatctttgccttcattcaaggacaaggaaaga
cttcttcaagctattgctcggaaccaggtaatagtggtatctggggagactgggtgtggt
aagacaactcaactgccacagtacattttggaatcggagatagagtctggtcgaggagcg
ttctgcaacatcatttgtacacaacctcggaggatatctgccatggcagttgcagaaaga
gtgtcagctgagagaggagaacctcttggtgaaacggttgggtttaaagttcgtctagaa
ggaatgagaggaaagaatactcaacttctgttctgtacgagtggtattctactcagacga
ctgctcagtgatcgcaatttgaatggcataacacatgttttcgttgatgagattcacgag
aggggaatgaacgaagatttcttgataatagtgttaaaggagcttcttccacggcgtcca
gatttgagattggttctcatgagtgccactttgaatgctgaacttttttctaactatttt
ggaggagcgcctacaattcacattccaggcttcacacatccagtgaaggcacattttctg
gaggatgtactcgaaatgacggggtataagttgacctctttcaaccaagtagatgattac
ggccaagaaaagacttggaaaacgcaaaagcagttgatgccacgcaaaaggaaaaaccag
atcacttctcttgttgaggaagctcttagcaagtcaacttttgaaagttatagctctagg
actcgtgattcactctcgtcttggatgcctgattgcgtaggatttaatcttattgaggcc
gttctctgtcacatatgccgcaaagaacgtccgggagctgtactagtgtttttgacagga
tgggatgatattagctccctgagggaccaaatcaaagcacatcctctcctcggtgatccc
aatagggtcttgctgttgatgtgccacggttcaatggcaactgctgaacagagactcatt
ttcgagagagcacctcctaatattcgcaaaattgtacttgctacaaacatggcagaagct
agtattacgataaacgatgtagtttttgtggttgactgcggaaaggcaaaagagacgacc
tatgatgctttgaacaatacaccttgtttgctaccctcatggatatctcaagcttctgct
cgacagcgaagaggtagagctggtcgtctgcttccgggagaatgctatcacttgtacccc
aaatgcgtgtatgaagctttttcggagtatcaacttcctgaacttctgagaactcctttg
aactctctctgcctgcaaattaaaagtcttcaggttgaaagcattgcagggttcttgtca
gctgcacttcaggctccagagcctttgaccgttcaaaatgctattggatttctgaaaatg
atcggagcactggatgagaaggaaaatctgacggatcttggaaaactcttgtcgattctc
ccagttgatcccaagctagggaaaatgctcataatgggtgccatcttccactgctttgat
ccgatcctgaccattgtatcaggcctcagtgtcagagatcctttccttctacctcaagag
aaaaaggacttagctttatcagccaagttgagattctcagcgaaagactacagcgaccat
atggcactagttcgtgccttcgaagggtggaaaaacgctgaaagagaaggatcggcttac
gagtactgctggaggaactttctgtcagctcagacgcttcaggcgatacattctctgagg
aagcagttcaactatatcctgaaagaagctggtttagtacacgatgattcagctctcaac
aacaagctaagtcacaatcagtctctggtccgcgctgtcatctgctctggcttattcccc
gggatagcatctgttgtgcatagagagacttccatgtcgttcaagacaatggatgatggc
caagtatcactatatgcgaactctgttaattcgaggttcccgacgattccatacccttgg
ctagtctttggagagaaagtgaaggtcaatgcagtgctcataagagactccaccggtgtc
cctgattccagtttgatcctttttggtggtgcactgagcaccggagtacaggtgggacat
ctaaaaatgcttgacgggtacattgacttcttcatggatccaaatttggcagactcctac
gtgaagctgaaggaagaactcaacaagcttcttcagaagaagcttgaagatccaagcgtg
gacattcacaaagaaggcaagtacctgatgcttgcagttcaagagctcgtagctggagac
caatgcgaagggagattcgtattcggccgtgacacaaagagggcaacaagccaaccgcaa
ttagcaggagagaacaacaaactctccaaagacggtacaaacccaaagagtctccttcag
acgcttttaatgagagctggacactcacctccaaagtacaagaccaaacatctgaagacg
aacgagtttagagcgcttgtggagttcaaagggatgcagttcgttgggaagcctcagagg
aacaaaacgctcgctgagaaagatgcagctgttgaggccttggcttggttgacccatacc
tctgataacagtactgaccagtacagtggagacgcggattctccacctgatgttactgat
aacatgcttaaactccttggtggaaaacggcgcaggcggtccaaaggcaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (25)   

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