KEGG   Brassica napus (rape): 106425604
Entry
106425604         CDS       T04128                                 
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X2
  KO
K14328  regulator of nonsense transcripts 3
Organism
bna  Brassica napus (rape)
Pathway
bna03013  Nucleocytoplasmic transport
bna03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    106425604
   03015 mRNA surveillance pathway
    106425604
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106425604
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     106425604
   mRNA cycle factors
    P-body specific factors
     106425604
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 106425604
NCBI-ProteinID: XP_013721780
Position
C6:12838902..12842173
AA seq 473 aa
MMKDPLAKRKVVVRHLPPSLSESDLLSQIDSRFGDRYYWFSFRPGKSNYKTQKHSRAYFG
FKAPEDVYDFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPCDKKDPREGSITKDPDYL
EFLELLAQPVENLPSAEIQLERREVEQSGASKSAPIVTPLMEFIRQKRATVIGSQGSLDG
RRGGRRARAISANNPSSRPSKRNSEKKKYVQKDNSKGVPRTASSDAGSSKQDYNQANSSA
ASVIDSSLPGIALTMDSGKKKILLLKKDRDNLVNSPQQAEQQMETNLSGSSSTSRQNQKI
DVGGRLIKGILRRNETRPSQASSLVQPEQRVEPTEAENSKRPLRPANIRAGKDYHVSGTN
SEKLERRARNKDRPDRVVWAPRRADGSNITEDQPTSSAANNGEVVNSSGGHTLENGSARH
SSRRIGARNRKEDGFAMTIEGKTPRRGGGGGGGGGGPSSHEKQMWIQKSSSGT
NT seq 1422 nt   +upstreamnt  +downstreamnt
atgatgaaggaccctctagcgaagaggaaggtggtggtaaggcacttgccgccttctctt
tctgagtccgatctgttatcccaaatcgactctcgtttcggtgatcgttactattggttc
tcctttcgtcctggcaagtccaactataaaactcagaagcattcacgggcctactttggt
ttcaaggcaccagaagatgtttatgactttgctgcctttttcaacggccatgtctttgtt
aatgagaagggtgctcagtttaaggccatagttgaatatgcgccttcacagcgtgtgccc
aaaccatgtgacaagaaagatcctcgtgaaggctctattaccaaagaccctgattatctt
gaattccttgagcttcttgctcaacctgttgagaatctcccaagtgctgaaatccagctg
gagagaagagaagttgagcagtctggcgcttcaaaatcggctcccattgtcactcctctt
atggaattcatacgtcaaaaacgtgctactgtgattggatcacagggttcattagatggt
cgaagaggaggcaggagagccagagcaatctctgcaaacaacccaagttcgagaccttcg
aaacgaaactctgagaagaaaaagtatgtgcaaaaagacaattcgaaaggtgtgccccgg
acggcttcatcagatgccggcagctccaagcaagattacaatcaggcaaattcaagtgca
gcctctgtcattgatagctctctcccagggattgcattgactatggattctgggaagaaa
aagatcttgctcctgaaaaaagaccgtgacaaccttgttaactctccacaacaagcggaa
cagcagatggaaactaatctctccggaagctcctcgacttcaagacagaatcagaagatc
gatgttggtgggaggttgattaagggaatacttcggagaaatgagacgcggcctagccag
gcttcatctttggtccagcctgagcaaagagtggaacccacagaagcagaaaactccaag
cgtcctcttcggccagccaacattcgagcagggaaagattatcatgtttctggtaccaac
agtgaaaagctagagaggcgtgcaagaaacaaggacagacctgatcgtgttgtgtgggct
cctcgccgtgctgatggctccaatatcaccgaggatcagcctacatcttcagcagcaaac
aatggagaagtggtgaactcctctggtgggcacactcttgagaatggttctgctagacat
tctagtcgccgtattggagctcgcaatagaaaggaagacggctttgccatgactattgag
ggtaaaacaccccggagaggtggtggtggtggtggtggtggtgggggtcccagttcacat
gagaagcaaatgtggatccaaaaatcatcatccggtacttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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