KEGG   Brassica napus (rape): 106426380
Entry
106426380         CDS       T04128                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]
Organism
bna  Brassica napus (rape)
Pathway
bna03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106426380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106426380
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     106426380
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C DEAD R3H HA2_C HA2_N AAA_22 Ank_5 AAA_19 Ank_2 nSTAND3 ATPase Ank_4 AAA_7 T2SSE Sigma54_activat AAA_11 AAA_16
Other DBs
NCBI-GeneID: 106426380
NCBI-ProteinID: XP_013722550
UniProt: A0A816K4U6
Position
C4:complement(54383264..54389193)
AA seq 1310 aa
MGNKRFRSENAAGKPSSVEATRIWASKVIEDFRASGNEVYTFGHNLSNTERGVIHQMCRK
MGIQSKSSGQGNQRRLSIFKDMYRNGKNKGAKEKSRNREKLRCVSFPPEADAILQELFTY
YPPCDGDTAATSFNKYVGNSCKQGQWKDDFFRKPLMSGDEILDKVASLSSRLRSDRALQE
ISKLRSRLPITSFRDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWASKRETCKIV
CTQPRRISAMSVSERISCERGESIGDNIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKG
SGSYVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGG
CPVVRVPGFTYPVRTLYLEDVLSILKSGGDNHLSSANLSTPDQKFYLTDEDKLALDEAII
LAWTNDEFDALLDLVSSRGSPEIYNYQHQSTLLSPLMVFAGKGRISDVCMLLSFGADCNL
KSKDGMTALEMAETENQLEAAQIIREHAESSQSNSQQAQQILDKYMATINPEQVDVSLIQ
QLMRKICGDSEDGGAILVFLPGWDDINKTRQRLLDSPFFSDGSKFNIICLHSMVPAGEQK
KVFSRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLQSSWVSKA
NAKQREGRAGRCQPGICYHLYSRLRAASMPDFKVPEIKRMPVEELCLQVKILDPNCKTND
FLQKLLDPPVDQSIANALSILQDIGALTPEEELTELGEKFGHLPVHPLISKMLFFAVLVN
CLDPALTLACAADYKEPFTMPMSPVERQKAATAKLELASLCGGDSDHLAVVAAFDCWKNA
KERGLAAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPYDISSCSQNSRDPGILRAV
LAVGLYPMVGRLCPSFGNNRRSLVETVSGAKVRVHSLSNNFNLSSRKYDESLVVFDEITR
GDGGMHIRNCTVARDLPLLLVSTEIAVAPTVSSEADDSDDEEEEDDEETGEEEEEGDNSN
EEGMNIHKAESRREQNMMSSPENSVKLVVDRWLPYRTTALEVAQMYILRERLTASILFKV
RHPRENLPPHLGASMYAIARILSYDGHAGLSSPSESMRPKHSRAEMYETGGWEEKPNSFL
NSLFWSLSLRENKPSSSGHVNRNPQHGFNTVQTEVASMHTQQNIKQRNPKAANNGDSGKK
KEKMYVNHTNGIHQPEAASIAKQSKHKSANSLSLGNKKENMPSDQVYGNQQPNSAPREAA
SPVAKHQISKKTKNRPANNSDFGKKKTQYVPKIDLHKKEREGKVEQKGNA
NT seq 3933 nt   +upstreamnt  +downstreamnt
atggggaacaagaggttcaggtctgaaaatgcagcaggcaagccaagttccgtcgaagct
actaggatctgggcttctaaggtcatcgaagactttcgtgcctccggtaacgaagtttac
acgtttgggcataatctctcaaacaccgaacgtggcgtgattcaccagatgtgtcggaaa
atgggtattcaatccaaaagctctgggcaagggaatcaaaggcgtctttcgatattcaaa
gacatgtacagaaatgggaagaacaaaggagctaaggagaagtcaagaaacagagagaag
cttcggtgcgtctcgtttccgcctgaggctgatgctattctccaggagttgtttacttat
tatccaccctgtgacggagatactgctgctacgtcgttcaacaagtacgtaggcaactct
tgtaaacaagggcagtggaaagatgatttttttaggaagccgctgatgagcggtgatgag
atcttggacaaggtggcgtctttgagttctaggctgaggagtgatagagctctccaggag
atctctaagttgcggtcaaggcttcccatcacatcgtttagagatgctataacatctgca
gtggaatccaatcaggttattcttatttctggtgaaactggttgcgggaaaactactcag
gtgcctcaatatcttttagaccatatgtgggcaagcaaaagagaaacttgcaaaattgta
tgcacccaaccacggcgtatctccgcaatgtcagtttctgaaagaatatcctgtgaaaga
ggtgaaagcattggagacaacattggttacaaggttcgactgcagagcaaaggtggaagg
cactcatcagttgttttctgcaccaatggcattctcctgagagtgcttgtaggaaaaggc
tctggtagctatgtttccgacataactcacatcattgtggatgaaatccatgaaagggat
tgctactctgatttcatgttggcaattataagggacttgcttccatcaaatcctcatctc
cgtctgatcttaatgagtgctacgcttgatgctgagagattctcgggatattttggaggt
tgcccggttgtccgtgtccctggattcacttatccagtgagaactttatatttggaggat
gtgctttctattctgaagtcaggtggagataatcatctaagctctgccaacttgagtaca
ccagaccagaagttttatttaacagatgaagataaacttgctttagatgaagcaatcatc
ttggcttggacaaatgatgagttcgatgccctcttagatctagtttcttctcggggaagt
cctgagatctacaattatcagcaccaatcaaccttgctatcaccacttatggtatttgct
ggaaaaggaaggatcagcgatgtatgcatgctcctctcattcggcgcagactgtaactta
aagtccaaagatggtatgacagcgttagaaatggccgaaacagagaaccagctagaagct
gctcaaatcatcagggagcatgcagaaagctctcagtctaattctcagcaagcacaacag
atactcgataagtacatggcgacaatcaacccggagcaggtcgatgtgagtcttatacag
cagctaatgaggaaaatatgtggcgactcagaagatggtggtgccattcttgtgtttcta
cctggatgggatgatataaataaaacaagacagagattacttgacagcccttttttctcg
gatggtagtaaattcaacattatatgtcttcactcaatggttccagcaggggagcagaag
aaagttttcagtcgccctcctcgaggttgtcgcaagattgtgctcgctacgaatattgct
gagtcagcagtgaccattgatgatgtggtttatgtgatagatagtggccggatgaaggaa
aagagctatgatccttacagtaatgtttcaactcttcaatcttcctgggtatcgaaagca
aatgccaaacagcgtgagggtcgcgcaggtcgttgccagcctggcatttgttatcatctt
tattctagacttcgtgcagcttctatgccagattttaaagttcctgagattaagaggatg
cctgtagaagaactctgcttacaggttaagatcctcgatccaaattgtaaaacaaatgat
tttctccagaaactgttggacccgcctgttgatcaaagtattgcaaacgccttgagcatc
ctacaagacatcggggccctgacacccgaggaagagctgacagaacttggagagaagttt
ggtcatctcccagttcatcctctgataagcaagatgcttttcttcgctgtattagtgaac
tgtctggatcctgcacttactctggcatgtgcagcagactacaaggaacctttcaccatg
cccatgtcgccagttgaaagacagaaagctgctactgcaaaacttgaacttgcgtcgctc
tgtggaggcgacagtgatcacctagcggttgttgctgcctttgactgctggaaaaacgca
aaagaaagaggtcttgcggctgagttttgctctcagtactttgtctccccaagtgctatg
aagatgttggatcaaatgcgtagccaacttgagtcagaacttaaaagacacgggattatt
ccttatgacatatcgagttgtagccagaactcgcgtgatccgggtatactccgtgctgtc
ctagctgtaggattgtatccaatggtggggagattgtgcccatcttttggtaataatcga
agatctttggtagagactgttagtggtgctaaagttcgtgtgcattcactctcaaacaac
ttcaacttgtcgtcgaggaagtatgatgaatccttagttgttttcgatgagatcacacgt
ggagatggaggcatgcacataagaaactgtaccgttgctcgcgatctccctttgttactg
gtctcaacagagatagctgtagctcctacagttagcagtgaagctgatgatagtgatgac
gaggaagaagaagatgatgaagaaacaggcgaagaagaagaagagggagataatagtaat
gaagaggggatgaatatacataaagcagagagtaggcgtgaacagaacatgatgtcttcg
cctgaaaattcagtcaagttagtagttgatcgttggctgccttacagaaccacagccctt
gaagttgctcaaatgtacattttgcgtgagcgactaactgcatccattttgtttaaggta
agacatccacgggaaaacttaccgcctcatcttggagcttctatgtatgcaatagctcgt
attctctcatatgatggtcatgcgggactttcatctccatcggagtctatgaggccaaaa
cattcgagggctgagatgtatgaaactggaggatgggaagaaaagccaaactctttcctc
aactcactcttttggtctctgagtctgagagagaacaagccttcttcttctggtcacgtg
aataggaatccacagcatggtttcaacacggttcaaacagaagttgcatcaatgcatacg
cagcaaaacatcaagcaaagaaaccccaaagcagctaacaatggtgattcgggtaagaaa
aaagagaaaatgtatgttaatcacaccaatgggattcaccagcctgaagctgcatctatt
gctaagcaatcaaagcacaaatcagccaacagtttgagtttaggtaacaagaaagagaac
atgccttcggatcaggtctatggtaatcagcaaccaaactcagctccaagagaagctgcc
tcaccggtggctaagcatcagatcagtaagaaaacaaagaacaggccagccaacaactcg
gattttggcaagaagaaaacacagtatgttccaaagatcgatctccataaaaaggaacgc
gaaggcaaagtagagcagaagggaaatgcatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (18)   
   Pfam (18)   
All databases (30)   

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