KEGG   Brassica napus (rape): 106438093
Entry
106438093         CDS       T04128                                 
Name
(RefSeq) regulator of nonsense transcripts UPF2
  KO
K14327  regulator of nonsense transcripts 2
Organism
bna  Brassica napus (rape)
Pathway
bna03013  Nucleocytoplasmic transport
bna03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    106438093
   03015 mRNA surveillance pathway
    106438093
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106438093
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     106438093
   mRNA cycle factors
    P-body specific factors
     106438093
SSDB
Motif
Pfam: MIF4G Upf2 Glycos_transf_N
Other DBs
NCBI-GeneID: 106438093
NCBI-ProteinID: XP_013734602
Position
C3:complement(13374100..13381596)
AA seq 1173 aa
MDHHQEEESNREKQDDEKEALARLEEIKKSIEAKMALRQNNLNPERPDSAYLRTLDSSIK
RNTAVIKKLKQINEEQREGLMDDLRSVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLL
HQRYKEFSPSLTQGLLKVFLPGKSAEDVDADRNSKAMKKRSTLKLLLELYYVGVIEDSNI
FISIIKDLTSAEHMKDRDTTQTNLTLLAGFARQGRVFLGLPISGQDEDFFKGLGVTAEQK
KNFKKTFNTYYDALAELLQSEHKSLQQMEKENAKLVNAKGELSEDSASSYEKLRKSYDHL
YRNISSLAEALDMQPPIMPEDGTTRLTAGDEASSPGAVKDTSVPEPVWDDEETKTFYECL
PDLRAFVPAVLLGEVEPAKTKNKSSESSSEVVESQQTAEDTTEFPADSGNMADVSITEQP
KEKDDVDKEKAKGAKKEKGKEKDSDKKLENEKEKGKSLDVANFERLLQRLPGCVSRDLID
QLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYYSRMIATLATCMKDIPSTLVQMLEE
EFNYLVHKKDQMNIESKIRNIRFIGELCKFKIVPSGLVFSCLKACLDDFTHHNIDVACNL
LETCGRFLYRSPETTLRMTNMLDILMRLKNVKNLDPRQSTLVENAYYLCKPPERSARISK
VRPPLHQYIRKLLFSDLDKDSITNVLKQLRKLPWSECEQYILKCFMKVHKGKYGQIHLIA
SLTSGLSRHHEEFAVAIVDEVLEEIRVGLELNEYGAQQKRLAHMRFLGELYNYEHVDSSV
IFETLYLTLSYGHGTSEQEVLDPPEDFFRVRMVIILLETCGHYFDRGSSKKRLDQFLVHF
QRYTLSKGHLPLDIEFDLQDLFANLRPNMTRYTTIDEINAAILQLEEREHASTADKVSVE
RHSDTKRPGMFLNGKSNEKNIGENGEAPKEESDSDSGSGSAVRDGQNEELDDGNHERGSD
SDDGDDYEDGVGPGSDDDNEFRVRQKVVTVDPEEQADFDQELKALLQESIEQRKLELRGR
PALNMTIPMSVFEGSGKDHHHFGRVTGDNGEEVVDEENGEPREVQVKVLVKRGNKQQTKQ
MLIPSDCSLVQSTKQKEAADLEEKQDIKRLVLEYNERDEEEANGLGTQASNWIPGGSRGN
TRSTGEGSGKGGGSRHRFVYHQGGGGSYYSRRK
NT seq 3522 nt   +upstreamnt  +downstreamnt
atggatcatcatcaagaggaggaaagcaaccgcgagaaacaagacgacgagaaggaagct
cttgctcgtcttgaggagattaagaagtcaatcgaagctaagatggctcttcgtcaaaac
aatctcaatcctgaacgacctgattcggcgtatcttaggactctggattctagtatcaag
cgcaatacagcagttatcaagaagttgaagcagatcaacgaggagcagcgtgaagggctc
atggatgatctgcgaagtgtaaaccttagcaaattcgttagtgaagctgttactgccatt
tgtgaggccaagctcaaaagctcagatatacaagcagctgtccagatatgctcactactt
catcagaggtataaagagttctctcctagtctaacacaagggctcttgaaagtcttcctt
cctggaaaatccgccgaagacgtagatgcagacagaaactcaaaggccatgaaaaagcgc
agtaccctaaaacttcttttggagctctactatgttggagtaatagaagatagtaacatc
ttcatcagtattattaaggaccttaccagtgctgaacacatgaaagatcgagatacgacc
cagacaaatttgacacttcttgccggttttgctaggcaaggaagagtttttcttgggctt
cccatatctggacaagacgaagatttttttaaggggctcggcgtcactgcagaacagaaa
aagaattttaagaaaactttcaacacatattatgatgctctggcagagttgcttcagtct
gagcacaagtcacttcaacaaatggaaaaagaaaatgcaaagctggtaaatgctaaaggg
gagcttagtgaagacagtgcatcgtcatatgaaaagctgaggaaatcatatgaccatctc
tatcgaaatatctcctctttggctgaagcacttgatatgcagcctcctattatgccagag
gatggtacaactaggctcacagcaggggacgaagcctcatcgcctggtgctgtaaaagat
acatctgtccctgaacctgtttgggacgatgaagagaccaagacattttatgagtgcttg
cctgatctgagggcatttgttccagcagtcttgttgggagaagtggagcctgcaaagaca
aaaaacaaatcatctgagtctagctctgaagttgtcgaaagtcaacaaacagctgaagac
acaacagagtttcctgctgattctggtaatatggctgatgtctcaattactgagcagcca
aaagagaaggatgacgtagacaaggaaaaggctaagggtgctaagaaggaaaaagggaaa
gaaaaggatagtgacaagaaattggaaaatgagaaggagaaaggcaagagccttgacgtg
gcaaacttcgaaagattgttacagcgacttcctggttgcgtaagccgtgatcttattgac
cagttaacggtggaatattgttatttgaattccaaaacaaacagaaaaaaacttgtcaaa
gcgttatttaatgtccctaggacatctctggagttgctagcatactattcgcgtatgatt
gcaacactagcaacgtgcatgaaagacatcccttctacgcttgtgcagatgttggaggag
gagttcaattatctagtccataaaaaggaccaaatgaatatcgaatcaaaaatccggaac
atcagatttattggagaactctgcaagtttaaaattgtgccttctgggcttgtattcagt
tgtttgaaggcttgcttagatgattttactcatcataacattgatgttgcttgcaatctt
ctggagacatgtggccgtttcctttatcggtctcccgagaccacactcaggatgactaat
atgctggacatattgatgcgcctaaaaaatgtcaagaacttagatcctcgtcaaagcact
cttgtggaaaatgcctactacctttgtaaaccacctgaaagatcagcacgaatctctaaa
gttcgtccaccattgcatcagtatattcgaaaattgctattctcagatcttgacaaagat
tccattacgaatgtactgaagcaactgcggaagttgccatggagtgaatgtgagcaatac
atcttaaagtgttttatgaaggttcacaagggaaagtatggtcagattcacttaattgct
tccctgacttctggattgagccgccatcatgaggagtttgcggtggctattgttgatgag
gtactggaggagataagggttgggcttgagttgaatgaatatggggcacaacagaagcgt
ctggcccatatgagattcttaggggagctgtacaactacgagcacgtagattcgtctgtg
atattcgagacgctttacttaactctttcatatggtcatggtacttcagagcaagaggtg
ctggatccgccagaagattttttccgtgtcaggatggttatcattcttctggaaacatgt
ggacactactttgatcgaggttcttcaaagaaaaggcttgatcagtttttggtacatttc
cagagatacacactgagcaaaggtcatcttcctctggatattgaatttgacttgcaggat
ctttttgccaatttgagacccaatatgacccgttacacgactattgatgagatcaatgca
gctatacttcagctggaagagcgtgaacatgcttctactgcagacaaagtcagtgtagaa
agacattcagatacaaagcgtccaggcatgtttttgaacggtaaaagtaatgaaaaaaat
attggagagaatggtgaagctcccaaagaagaaagcgacagtgattctggtagtggctct
gctgtacgagatggacagaatgaagagttggatgatggaaatcatgaacggggatctgat
agtgacgatggggatgactatgaagatggcgttggacctggatctgatgatgataacgaa
tttcgggtaaggcagaaggtagtaaccgtagatcctgaggagcaagcagactttgatcaa
gaactcaaggctttacttcaggagagcatagagcaaagaaagctagaattgcgtggtaga
ccagcattgaacatgacaataccaatgagtgttttcgaaggatctggaaaagatcatcac
cattttgggcgagtcacaggtgacaacggtgaagaagtcgtggatgaagagaatggagag
ccaagagaagttcaagtaaaggtcctagtgaagagaggaaataaacaacaaacgaaacaa
atgctaatcccgagtgattgctcgctagtgcagagcacaaaacagaaagaggctgcggat
ttggaagagaagcaagatataaagaggttagtgctcgagtacaacgagagagacgaagag
gaagctaatgggttagggacacaagcctcgaattggatacctggtggaagcagaggaaac
actcgtagcacaggtgaaggaagtgggaaaggtggtggatctcgtcaccggtttgtttat
catcaaggaggtggcggttcgtattattcccgaagaaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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