KEGG   Brassica napus (rape): 106439595
Entry
106439595         CDS       T04128                                 
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
bna  Brassica napus (rape)
Pathway
bna03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    106439595
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bna03400]
    106439595
DNA repair and recombination proteins [BR:bna03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     106439595
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII Helicase_C_2 ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 106439595
NCBI-ProteinID: XP_013736530
Position
C7:16240323..16243977
AA seq 1034 aa
MDMTTCVGRRTRSRTESYLNSLLNKSKGISVENQSRSRIERRKKRDSLRDSVSPAKPKRR
REKKRKDDDDVEFVETIYPKGKQDDDNVGSSPVIAPSLESKSPVVDVNSIDEEKTPDDDD
CSVDCDMDVDDGDLRGEEKVSEADEVVSLSSSSEEEGSVEEVCGEDDYSDEEEEDVESDS
SDYMEESSDSTYTGSSDSGFDCSDDDDEVGGDARNTSKVKNKSPSERVYKREKPKNYYKK
NDLDVFRLLAKSVWDRTKIFDQEICSGEDEDTAEFDTREDPIVRDSSGEYPIVRERKRRR
YHREKKKKHLNVTDQQGDSFCEEGGKPWLSTHVNLRFGCEEEPEPIEKTEEEKEIDRLWE
DMALALSLEGVRSSAHSRSGDVSCSNGKHDFVLDEEVGLKCRYCSYVSVEIRDVSPTMDK
YRANINDKKTCSDKKGNPLLDSLDFEASDRSRDMESLKNTQGTVWEYIPGIKNTLYPHQQ
EGFEFMWNNLAGTTKLDELKSSVGKESGGCIISHSPGTGKTRLTIVFLQSYLEQFPESHP
VVIAPASLMLTWEEEFKKWNSNIPFYNMSSQDFSGQENQSAVSLLKGNRHLRRNKDSVRM
VKLYSWRNKKSILGISYNLYEKLAGNRCAGEVQEFRKMLLELPGLLVLDEGHTPRNHNSC
IWKVLTEVKTEKRIILSGTPFQNNFKELSNVLCLTRPAYADKISSRLQDLTRLSQEGKNG
RFDEEVGISELKDMIAPFVHVHKGNILRESLPGLRDCVVMLNPPFQQEKILKRIDHSQNT
FELEHKLSAVSVHPSLYMCCKQTNKEQLTIGPVALKVLESLRLDSKEGAKTRFLIDFIRF
SQTVNEKVLVFSQYIDTLELIRDQLNAVFGWTEGEEILYMHGQLKQTIRQHLINNFNRPD
SKSKVLLASTGACSEGIHLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLMV
KGTTEWGKYCKQTKKHRISEMVFSPTNEKDKLIENEVVSEDKILDEMVRHEKLKDMFGKV
LYRKKESDMFTDIL
NT seq 3105 nt   +upstreamnt  +downstreamnt
atggatatgactacttgcgtcggcagaagaactcgttcgaggacggaatcgtacttgaac
tcacttctgaacaaatcaaaggggatctctgtggagaatcaatctaggagtaggatcgag
aggcggaagaagagagattccttgcgtgattctgtttctccggcgaaaccgaaacggcga
cgtgaaaagaagaggaaagatgacgatgatgtcgagttcgtggagactatctacccgaaa
ggtaagcaggatgatgataatgtaggctcatcaccagtgattgctcctagtttagaatcg
aaatcgcctgtggttgatgtgaattcgattgatgaggagaaaactcccgatgatgatgat
tgcagtgtcgattgtgatatggatgtggatgatggtgatttgaggggtgaagagaaggtt
tcagaagctgacgaggttgtgagtcttagctctagctctgaagaagaaggctctgtagaa
gaagtgtgtggtgaagatgactatagtgacgaagaagaagaagatgttgagtctgactcg
tctgattacatggaggaaagctcagattctacttatacagggagctctgatagtggtttt
gattgttctgacgatgatgatgaggttggtggtgatgccagaaacacttctaaagtgaag
aacaagagcccaagtgaaagagtatataagagggagaaaccgaagaattattataagaag
aatgatttggatgtatttaggctgctagcaaaatctgtttgggacagaacaaagattttc
gaccaagaaatctgctccggggaagatgaagacacagcagagtttgatactagggaagat
cctatagttagagacagctctggtgaatatcctatagttagagagaggaaacgaaggaga
taccatagggagaaaaagaagaagcacttgaatgtgactgatcagcaaggagactcattt
tgtgaggaaggtggtaaaccatggctttcgactcatgtaaaccttagatttggttgtgag
gaggagcctgagccaatagagaaaacagaagaggagaaagagatagacaggttgtgggaa
gatatggccttagctttatcattggaaggtgtacgctcttctgctcattctagaagtgga
gatgtgtcatgtagcaatgggaagcatgacttcgtacttgatgaagaagttggtctaaaa
tgccgctactgttcttatgtctccgtcgagatcagagatgtctcgcctactatggacaag
tatcgagctaatattaatgacaagaagacatgcagtgacaaaaagggtaaccctttactt
gacagtcttgattttgaagcttcagaccgcagcagagatatggagtctttgaaaaataca
caaggaacagtctgggaatacatccctggaataaagaatactctgtacccacaccaacaa
gaaggctttgaatttatgtggaataacttagctgggacaacaaaacttgacgagttgaag
agctcagtgggaaaagaaagtggcggatgcattatctctcactcgcctggaactggtaag
acgcgtttgaccatcgtgtttcttcagtcatacttagaacagtttccagagagccatcct
gtggtgatagctcctgcaagcttaatgcttacttgggaagaagagttcaaaaaatggaat
tcaaacattccgttttacaacatgagtagtcaagatttctcagggcaagagaaccaatca
gctgtctcacttctaaagggaaacagacaccttaggagaaacaaggattctgtccgtatg
gttaagctatattcttggaggaacaagaaaagcattcttggaatcagctacaatctgtat
gagaagctcgccgggaacaggtgcgccggagaagtgcaagagtttagaaagatgttgcta
gagttgcccgggctgctggtccttgatgaaggccacacaccgaggaaccataacagttgc
atttggaaagtgctcactgaagtcaagacggagaaacgtatcattctttcggggacaccg
ttccagaataacttcaaggagctttctaacgtcttgtgcctgacaagaccagcttatgca
gataagatctcttcgaggctccaagatctcacgaggttgagccaagaaggcaaaaacggg
aggttcgatgaagaggttgggatctcggagttaaaggatatgattgctccttttgttcat
gtccacaaaggaaacatcctgagagaaagccttcctggtctaagagactgtgttgtgatg
ttgaaccctccttttcaacaggagaaaatcttgaagagaattgaccattctcaaaacacg
tttgagcttgagcacaagctttcagctgtttctgtacacccatctctgtatatgtgctgc
aagcagacgaacaaggagcagttaacaattgggccagtagcattgaaagtcctggagagc
cttaggcttgactcaaaggaaggtgcgaagactaggttcctgatcgacttcatccgcttc
agtcaaacagtgaacgagaaagtcttggtgtttagccaatacattgacactctagagctg
atcagagaccagctgaatgcagtatttggctggacagaaggtgaagagattctctacatg
catggtcaacttaaacaaactataagacagcatctgatcaacaacttcaacagaccagac
agtaaatctaaagtgctactggcatcaacaggagcgtgttcggagggtattcatctcgtc
ggcgcttcgagagttgtcctcctagacgtcgtttggaacccttctgttgagcggcaagcc
ataagtcgagcttacagaatcggtcaaaagcgggtggtgtacacttaccatctcatggtt
aaaggcacaactgagtggggaaagtactgtaagcaaaccaagaagcatcgaatatccgaa
atggtcttctctcccaccaacgagaaggacaagcttattgaaaacgaagttgtgtctgaa
gataaaatcctggacgagatggttcgccatgagaagctgaaagacatgtttgggaaagta
ctttatcgcaaaaaggaatctgacatgtttaccgacatcctctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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