KEGG   Brassica napus (rape): 106446890
Entry
106446890         CDS       T04128                                 
Name
(RefSeq) uncharacterized protein LOC106446890 isoform X1
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
bna  Brassica napus (rape)
Pathway
bna03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106446890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:bna03000]
    106446890
   03019 Messenger RNA biogenesis [BR:bna03019]
    106446890
   04121 Ubiquitin system [BR:bna04121]
    106446890
Enzymes [BR:bna01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106446890
Transcription factors [BR:bna03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    106446890
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106446890
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     106446890
Ubiquitin system [BR:bna04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    106446890
SSDB
Motif
Pfam: zf-RING_4 Baculo_IE-1 Rtf2 RRM_1 zf-RING_2 zf-UDP
Other DBs
NCBI-GeneID: 106446890
NCBI-ProteinID: XP_013744158
Position
A4:15339172..15343781
AA seq 882 aa
MDLGKRMNNNDKGEKTCPLCAEEMDLTDQHLNPCQCGYQICVWCWHQIIEMAEKDKTEGR
CPACRTPYDKEKIVGMTASCESLVAELNNDRKKSHKAAKPKAASEGRKDLTGVRVIQRNL
VYVMSLPFDLADEDQRFQRREYFGQYGKVVKVAMSRTQAGDIQLFPNDSCSVYITYSKEE
EAIRCIRSVHQFALDGRILKACFGTMKYCHAWLRNMPCNNAECLYLHEIGAPEDSFTKDE
TVSVHMKEIIKEITGAVANFPRRSGYMLPPPVDDFVDRQIPKCVPNNPQSVAKTSRPNSS
NGRSVTLPAGALWGMHASSQSSVPNTPSSGEPLRDKVVTDENHTPYGNALKLPEPLNSQA
DFPELSLVNRPHTSNSKALVSVPSACTEFPEPASRGIQSVCSEAVSVDADSVVDSYGGLR
RSDSSDVDQASSHTEVSRDSLQHFIDETREVRPLKRTNEVVVVPREEVNAGSALRSPLVT
DISSFIRERLKDPEVFSCQPNKSGFLRTMQPSSSQYDETRSLFGSSSAESRGINIASISH
GYNEMPQSEPSRLNGSLNHSIGFPDRGRETQSDGNSRSGIDDRIANILSLDLDEYLTSAH
NMSKQQQLASSCEVKNSQSRFSFARQGESKDQAFGSYNVFNHGSDLYKTSSEQQSSDLDM
IGMYNGISSSYLKEMDHVTQNSALPSSYKPPSVPRCPVTAPPGFSVASRPPPPPGFASNG
REQQTFNGFSGNHRYSDSPVYINSYHQSLPTENNGGVRDVQFMDPAIMAVGQGFENPSLD
YRSNFQGNTNLFAKEAKFQQQHAVQSPLSSNQNCRLTDSLGMASRFIDQSQGSNSILSRN
MGLPNGQWDGLSNEIQSLNRLQNERFTGSTNRMMNYNGTFRI
NT seq 2649 nt   +upstreamnt  +downstreamnt
atggatttaggtaaaaggatgaataataatgacaaaggagaaaagacttgtcctctatgt
gctgaggagatggacttgactgaccagcatctcaacccttgccaatgtggttaccagata
tgtgtttggtgttggcatcagattatagagatggctgagaaagataagacagagggacgc
tgtcctgcatgtcgaactccttatgataaggaaaagattgttggaatgactgctagctgt
gaaagtttggttgctgaacttaacaatgaccggaaaaaatcacacaaggccgccaagcct
aaagctgcttctgagggaaggaaagatctaactggtgtgagagtcattcaaagaaacttg
gtttatgttatgagcttgcctttcgatctggcagatgaagatcagcgttttcagaggaga
gagtactttggtcaatatgggaaagtggtgaaggtagcaatgtctcgaacgcaagcaggg
gatatccaactatttccaaacgattcctgcagtgtatatattacttactccaaagaggag
gaagctattcgatgtatccgatcagtgcatcagtttgctttggatggtagaatcctcaag
gcatgttttgggaccatgaagtactgtcatgcgtggttaagaaacatgccttgtaacaat
gcagaatgcctttacttgcatgagatcggcgccccagaggatagtttcacaaaagatgaa
accgtatcagtgcacatgaaggaaattattaaagagattactggtgcggtggctaatttt
ccgcggcgttcaggatatatgttacctccaccagtggatgattttgttgatagacagatt
ccaaaatgtgttccgaataatccgcagagtgtggctaaaacttctcgcccaaatagtagc
aacggccgatctgttactcttcctgctggagccttatggggaatgcatgcttcaagccag
tcttcggtaccgaacacaccatcctctggggaacccttaagagataaagtagtcacagat
gagaaccatactccatatggcaatgccttgaaactgccagaaccattgaatagccaggct
gattttccagagctttctttggttaataggccccacaccagtaatagtaaggcactagtt
agtgtgccatcagcttgcacagaatttccagagcctgcttctagaggtatacagagtgtc
tgcagcgaggctgtgtcagtggatgcagatagtgttgtggatagctatggagggctaaga
aggtctgacagttcagatgttgatcaagcttcatctcatacagaagtgtcccgagactct
ctacagcatttcatcgatgaaactagagaagtgcggccattaaagaggacaaatgaagtg
gttgttgtccccagagaagaagttaatgcaggcagtgctttgaggtctccattggtaaca
gatatatcatctttcattagagaaagactcaaggatcccgaagtttttagctgtcagccc
aataaatctggtttcctacgcactatgcagccttcttcatcccagtatgatgaaaccagg
agtctgtttggatcctcctcggctgaaagcagaggaattaatatagcttccatctcacat
ggatataacgagatgccacagagcgagcccagtcgtttaaatggcagtcttaatcattct
attggttttcctgatagaggaagggagacacaatcagatggaaactctaggagtggaata
gatgacaggattgcaaatatattgtcgttagatcttgatgaatacttgacatcagctcat
aacatgtcgaagcaacaacagctagccagttcctgcgaagttaagaacagtcaatcccgg
ttttcttttgcaaggcaaggtgaatcaaaggatcaagcttttggatcttataacgtcttc
aaccatggcagtgacttgtacaagacttcttcagaacaacagagttctgatttggatatg
attgggatgtataatggtatttcatcaagttatctcaaagaaatggatcatgtcacgcag
aactcagctttgccctcgtcttataaacctccttctgttcctagatgtccggttacagcg
ccacctggattttcagttgcaagtcgacctcctcctcctccaggctttgcgtcaaatggg
agagaacaacagacatttaatggcttttcaggaaaccatcgttattctgactcaccagtg
tacataaactcatatcatcagtcacttccaacggaaaacaatggtggtgtcagagatgtt
cagtttatggatcctgctattatggctgttggtcagggctttgagaatccaagcctagat
taccgatcaaactttcaaggaaacacaaacttgtttgcaaaggaggcaaagtttcaacag
caacatgcagtgcagagccctttgtcttcgaatcaaaactgtagactcactgactctttg
ggaatggcgtcaaggtttatagatcaatctcaagggagtaatagcatactatctaggaac
atgggcttgcctaatggccagtgggatgggttgagcaacgagatccaaagtctaaacagg
ctacagaacgagaggtttactgggtcaacaaaccggatgatgaattacaatgggactttc
aggatttaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (6)   
   Pfam (6)   
All databases (28)   

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