KEGG   Brassica napus (rape): 111204503
Entry
111204503         CDS       T04128                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:3.6.4.13]
Organism
bna  Brassica napus (rape)
Pathway
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111204503
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bna03041]
    111204503
   03009 Ribosome biogenesis [BR:bna03009]
    111204503
Spliceosome [BR:bna03041]
 Complex A
  U2 snRNP components
   U2 related factors
    111204503
 Complex B
    111204503
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    111204503
Ribosome biogenesis [BR:bna03009]
 Eukaryotic type
  90S particles
   Helicases
    111204503
SSDB
Motif
Pfam: Helicase_C DEAD AAA_19 AAA_22 nSTAND3 HA2_N T2SSE AAA_16 SRP54 AAA_29 PhoH AAA_7 ATPase FtsK_SpoIIIE AAA_30 TsaE nSTAND1 ABC_tran Myosin_head AAA_11 TrwB_AAD_bind NTPase_1 AAA_24
Other DBs
NCBI-GeneID: 111204503
NCBI-ProteinID: XP_022555160
Position
A3:complement(16026813..16029080)
AA seq 432 aa
MMMKKKSERRNLPVWGQKEEFVRTLKENQMVMVTGETGSGKTTQIPQFVLEAMMDEIPSS
DDQWLIGCTQPHRVAAMTAARRVAEEMDVKLGEEVGYTVRFEDLSSPRTVLKYLTDVMLL
KEAMVDPLFLRYKVIIVDEVHDRSLATDLLISILNRTLISRPDLKLVVMSATLQVFNKRY
FRGAPLIKVPSGRLLHPVEILYTREPVMDYLESAISKVIQIHTCEPPGDVLVFLTGEEEI
EQACSRIVRSLGDQVTVVPLYSSLPPALQHKIFDPTPPPHSVRKIIVSTNVAETSLSMDG
IVYVVDPGFSKQKNYSYLTTDELWFVSRISQASAYQRAGRAGRKCFRLYTEKTFNDFMDK
EIPEILRSNLVKTVLTLKRLGVEDLTYFEYIDPPSTRMLFRGMEDLFHLGAMDDQGNLTN
IGHMMESLEEPL
NT seq 1299 nt   +upstreamnt  +downstreamnt
atgatgatgaagaagaagtcagaacgtaggaatctaccagtatgggggcaaaaagaagag
tttgtccgaacattgaaggagaatcagatggtgatggtgacgggggagaccggtagtggt
aaaacaacgcagatcccacagtttgttttagaagcaatgatggatgaaatccctagctct
gatgatcagtggttgattgggtgcacgcagcctcatcgagttgcagccatgactgcggca
cgtcgtgtcgctgaagagatggatgtaaagctcggggaagaagtcggttacacagtccgt
ttcgaggatctcagtagcccccgaacggtgctcaagtacctgactgatgtaatgcttctg
aaggaagctatggtggatccactctttttgagatacaaagtgattatcgttgacgaagtt
catgatagaagtttagccacagatttacttattagtattcttaaccgcaccttgattagc
cgacctgatcttaagcttgttgttatgagtgcaaccctacaggtttttaacaaaaggtat
tttagaggtgcgcctctcatcaaagtcccttctggtaggctcctccatccagtggagatc
ttgtacactcgagaacctgtgatggactatctcgagtctgccataagcaaagttatccag
attcacacgtgtgagccacctggtgacgttcttgttttcttgaccggggaagaagagatt
gaacaagcttgcagcagaattgtccgcagtcttggagatcaagtcacagttgtgcccttg
tattcctctcttccaccagctttgcaacacaagatcttcgatcctacaccaccaccacat
tcagtgagaaagatcatcgtctccaccaacgttgctgagacttctttgtccatggacggg
attgtttatgtggttgatcctggtttctccaagcaaaagaactatagttatctcactact
gacgagctctggtttgtgtcccgaatatcacaagcaagtgcttaccagagagcaggacgt
gccggtagaaaatgttttaggctctacactgagaagactttcaatgacttcatggataag
gagattcctgagatacttagatcaaaccttgttaaaacagttttgactttaaaaaggcta
ggggtggaggacttgacatattttgaatatatagatcctccttccactcgaatgctcttt
cggggcatggaggatttgtttcatctaggagcaatggatgaccaaggtaacttgacaaat
ataggccacatgatggagagtttggaagagccactttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (23)   
   Pfam (23)   
All databases (35)   

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