KEGG T02047: BANAN

Bifidobacterium animalis subsp. animalis ATCC 25527: BANAN_05035

Entry

BANAN_05035       CDS       T02047

Name

(GenBank) transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

bni Bifidobacterium animalis subsp. animalis ATCC 25527

Pathway

bni03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:bni00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BANAN_05035
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bni03400]
    BANAN_05035
Enzymes [BR:bni01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BANAN_05035
DNA repair and recombination proteins [BR:bni03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BANAN_05035

SSDB

Motif

Pfam:

DEAD TRCF UvrB_inter CarD_TRCF_RID Helicase_C ResIII RecG_dom3_C Nuc_rec_co-act Imm75 AroM

Other DBs

NCBI-ProteinID:

AFI63215

Position

complement(1186913..1190497)

AA seq 1194 aa
MPDDKARHSKANRSAEETYNELMNGSLLSLRQRLLEDQAFAGLVEGRVDAGEDADPSILV
GAPSGIRPALAAASADRKPVVIVVPSGREAEDLVGDLRSWYDGDPNEVAQLMAWETLPHE
RLSPRADTVANRMETFYRLCHPQSDSEMFGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQ
GEEIALEDAVQGLVRNSYTRVDLVMDRGEFAVRGGIIDVFVPTEPHPVRIEFFGDEIDTI
RRFHSSDQRTYGEPIRSVWATPCRELQLTEGIRERAQSLIGQIPNADDLLESIANAIPQE
GMESLIPALVDDLEPVSSMLPRDSIVMLFDPERLRRAVDDLMKTAGEFLATSWHVAASGH
GAGAPISFESANFLDLDEMVGQLTYSNHELWKVSGFTVDQSLPGHVQIDAVAPQDLHGSG
EKAEDHLGELIRNDYAVVITAAAQGTLSRLKRMLNEIGVVHFDTIRSQAQDGFIDHASKT
ALLTERDLTGRTSVAAGVKTARKRRKSIDLMELKPGDFVVHEQHGIGRFIEMRQRTTGSG
KNQATREYLVIEYAPSKRNAPPDKLFIPTDQLDQVSKYIGAEIPKLNKLGGSDWAQTKAK
AKKHVHEIAQNLIRLYSARQRAKGFAFSKDTPWQKELEDAFPYQETADQLTTIDDVKADM
EKPIPMDRLICGDVGFGKTEIAIRAAFKAVQDSKQVAVLVPTTLLVQQHLQTFTERFEGF
PVNIRAMSRFQSTKEINETIKGLADGTVDVVIGTHKLLSPKIKFKDLGLVIIDEEQRFGV
EAKETLKAVRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDA
QATAAIRRELLRGGQVFYIHNRVEGIEEKAKRLQDLVPEARIGIAHGKMGRKQLDQIIRD
FWHRDIDVLLCTTIVETGLDISNANTLIVDRADRFGLSQLHQLRGRVGRGRDRAYAYFLY
DPSKPMTEQSHERLVTIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYV
RMVSEAIEDYKDPERTEPVAVTIDLPIEASIPVDYIGSDKLRLEVYRKLAGARSEKDLNE
LRDELTDRYGKPPKVFESLFDVARLREKARALGISEIIGQGRKLRISKIDPAESVQLRIS
RIYPGAQYRPMLNAYTIPTPFEGSMGSGPMESDEVLRWTEQLLDDLAWSAKPVK

NT seq 3585 nt +upstreamnt +downstreamnt
atgcccgatgacaaggcaaggcacagcaaggcgaaccgatcggcggaggagacctacaac
gagctgatgaacggttcgctcctctccctcaggcagcgtcttttggaggatcaggcattc
gccggtttggtggagggccgtgtggatgcgggcgaggacgccgacccgagcatcctcgtc
ggagctcccagcggcattcgtccagcgctggccgccgccagtgcggaccgtaagccagtg
gtgatcgtcgtcccctccggtcgcgaggcggaggatctcgtcggcgatctgcgatcgtgg
tatgacggcgatccgaatgaagtggcacagctgatggcatgggagacgctgccccacgag
cggcttagcccacgcgccgacacggtggcgaaccgcatggagacgttctaccggttgtgc
cacccgcagtccgacagcgagatgttcggtccgatacgcattctggtcatgccggtgcgt
tcgctcatccagccggtggtggccggcataggcgacgtgaagccgctcgttttcgcgcaa
ggtgaggaaatcgcccttgaagatgccgtgcagggcctcgtccgcaattcctatacgcgc
gtcgatctggtgatggaccgtggcgagttcgcagtgcgcggcggcatcatcgacgtgttt
gtccccaccgaaccgcatccggtgcgcatcgagttcttcggtgacgagatcgacacgatc
cgccgcttccattcctccgaccagcgcacctatggtgagccgatcaggtcggtgtgggcc
acaccatgccgtgagctgcaactgaccgagggcatacgagagcgtgcgcaatcgctgatc
gggcagattccgaatgccgacgatcttctggaatcgatagccaacgcgatcccgcaggag
ggcatggagtctctcatcccggcattggtggacgacctcgaaccagtttcgagcatgctg
ccgagggattccatcgtaatgctgttcgacccggaacggttgcgtcgtgcagtggatgac
ctgatgaagacggcgggcgagttcctcgccaccagctggcatgtggccgcatcgggacat
ggcgcgggtgcaccgatctccttcgaatccgcgaacttccttgatctcgatgagatggtg
ggccagctcacctactctaaccacgagctatggaaggtgagcgggttcactgtggaccag
tcgctgccggggcacgtgcagatcgatgcggtggcgccgcaggatctccacggcagtggc
gagaaggccgaagatcatctcggcgagctcattcgcaacgattacgcggtcgttatcaca
gccgcggcacagggcacgctgagccgcctcaagcgcatgctcaatgagatcggcgtcgtg
catttcgacacgattcgttcgcaggcgcaagacggtttcatcgaccacgcgtcgaagacc
gcgctgctcaccgagcgcgacctcaccggccgcaccagtgtcgctgcaggcgtcaagacg
gcacgtaaacgtcgcaaatccattgatctcatggaattgaaaccgggcgatttcgtggtg
cacgaacagcatggcatcggtcggttcatcgagatgcgccaacgcacaaccggctcgggc
aagaaccaggccacccgcgagtacctggtcatcgaatacgcgccgagcaagcgcaatgcg
ccgccggacaagctgttcatacccaccgaccagctcgatcaggtgagcaagtacatcggt
gccgagattcccaagctcaacaagctcggcggttcggattgggcgcagaccaaggcgaag
gcgaagaagcatgtgcatgagatcgcgcagaacctcattcgcctgtattccgcgcgtcaa
cgtgccaagggattcgcgttcagcaaggacaccccgtggcagaaagagctcgaggacgcc
ttcccatatcaggagacggcggaccagctcaccacgatcgacgacgtcaaggccgatatg
gagaaaccgattcccatggaccgtctcatctgcggagacgtgggcttcggcaagaccgag
atcgcgatccgcgccgcgttcaaggcggtgcaggattccaagcaggtggctgtgctcgtg
ccgacgaccctactcgtgcagcagcatctgcagaccttcaccgaacgttttgagggcttc
ccggtgaatatacgcgccatgagccgattccaaagcacgaaggagatcaatgagacgatc
aagggtctcgccgacggcaccgtcgatgtggtgataggcacccataagctgctgagtccg
aagatcaagttcaaggatctgggccttgtgatcatcgacgaggagcagcgttttggtgtt
gaggcgaaggagacgctcaaggccgtacgcacgaatgtcgatgtactgagcctgtcggcc
acgccgattccacgcacgttggagatggccgtcaccggcattcgcgagatgtccacgctg
gcgactccgcccgaggaccgcctgcccgtgctcacctatgtgggcgcctatgaggacgcg
caggccaccgcggcgattcgacgcgaactgttgcgcggcggtcaggtgttctacatccac
aaccgtgtcgagggcatagaggagaaggccaagcgcctgcaggacctcgttcccgaggcc
cggataggcattgcccatggcaagatgggacgtaagcagctcgaccagatcatccgcgat
ttctggcatcgtgacatcgatgtgctgctgtgcacgacgattgtcgagacgggtctggat
atctcgaatgcgaacacgctgattgtggatcgtgccgaccgattcggcctctcccaattg
catcagctccgtggacgtgtcggtcgaggccgtgatcgtgcctatgcctatttcctgtac
gatccgagcaagccgatgaccgagcagtcccacgaacgtctggtcaccattgcgcagaac
accgcattgggttccggcttcgatgtggccatgaaggatctcgagttgcgcggcaccggc
aacctgctgggcgatgagcagagcggacacatcgaaggcgtgggtttcgacctctatgtg
cgcatggtgagcgaggcgatcgaggattacaaggatccggaacgcacggaaccggttgcg
gtcaccatcgacctgccgatcgaggcatcgatacccgtggactacatcggttccgacaag
ctgcggctagaggtctaccgcaagctggccggtgcccgcagcgagaaggacctgaacgag
ttgcgcgacgaactgaccgaccgctacggcaagccgccgaaggtgttcgaatcattgttc
gacgtggcgcgtcttcgtgagaaggcacgtgcgcttggcatcagcgagatcatcggccag
ggcaggaagctgcgcatctcgaagatcgaccctgccgaatcggtgcagctgcgcatctcg
cgcatctacccaggtgcccaataccggcccatgttgaacgcgtacaccatccccacgccg
ttcgaaggttcgatgggttccggtccgatggaatcggatgaggtgctgcgttggaccgag
cagctcctcgacgatctagcgtggtctgcaaagcctgtgaagtag

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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