KEGG   Brassica oleracea (wild cabbage): 106300121
Entry
106300121         CDS       T04124                                 
Name
(RefSeq) ATP-dependent RNA helicase DHX36
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106300121
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106300121
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     106300121
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N dsrm AAA_22 T2SSE AAA_19 AAA_16 Dicer_dimer nSTAND3 ATPase PhoH
Other DBs
NCBI-GeneID: 106300121
NCBI-ProteinID: XP_013591652
UniProt: A0A0D3CPA1
Position
C6:complement(3066986..3072811)
AA seq 1181 aa
MPYYSAIFRGHIKPNAVVVGAASMFIQHSSLHLFRSPNLLFSRPSSLVRSLHSQRSRVLS
AKAGRSSLEWRVSNLPYFQKQGYGRIAYNDYESSDESDRDVVGSSQSQQMAGSTLDNIDQ
WRFKLTMLLRNGEDQEVVSRERKDRRDFDHISAMATRMGLYSRQYSKIIVISKSPLPNYR
PDLDDKRPQREVVLPFGLQSEVDAHLHAFLDQKKMLIPEMSRPSSSDSLATGYGNYEKPE
TVMQNSLARERILRPRSLQLRSKQQQWVDSPEGQKMVEFRKTLPAYKEKEALLRAISANQ
VIVVSGETGCGKTTQLPQYILESEIEAARGAACSIICTQPRRISAISVSERVAAERGEQI
GESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLIDRSLKGVTHVVVDEIHERGMNEDFLL
IVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTYPVRAHFLEDFLETTGY
RLTSYNQIDDYGEEKTWKMQKQAQFTKRKSQISSAVEGALEAADFKGYQFRTRDSLSCWS
PDSMGFNLIENVLCHIVKGERPGAVLVFMTGWDDINSLKKQLEAHHLLGDPNKVLLLACH
GSMASSEQRLIFDRPPEGVRKVVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPC
LLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVYDAFADYQQPELLRTPLQSLCLQIKS
LGLGSISEFLSRALQPPEALSVQNAVEYLKLIGALDDNENLTALGKNLSMLPVEPKLGKM
LILGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESARSKFSGRDCSDHLTLIRAYSG
WKDAERTRSGNEYCWQNFLSAQTLKAMDSMRKQFFFLLKEASLIDNVESCSKLSYDEHLV
RAIICAGLFPGVCSVVNKEKSITLKTMEDGQVLLYTSSVNGNVQRIPFPWLVFNEKIKVN
SVFLRDSTAVSDSVLLLFGDKVSSGGFDGHLKMLGGYLEFFMKPSLAYTYLSLKRELDEL
IQNKLVNPKLDIQLYDKLMTAIRLLVSEDQCEGRFVFGRKALSPTTTKKLKVVGTQLPNS
GGENDKNHLQTVLARAGHGTPVYKTRQLKNNQFRAMVTFNGLDFMGKPCSSKKNAEKDAA
HEALLWLQGESKSSLNDLNHMSTLLKKDKSKKSARAPARWN
NT seq 3546 nt   +upstreamnt  +downstreamnt
atgccttactactctgcaattttccgaggacatatcaaacctaacgccgtcgtcgtcggt
gctgcctccatgtttatccaacatagctccctccacctctttcggagccctaacttgctg
ttcagcagaccatcgtctctagttaggtctcttcattctcagaggtcgagggtcttgtcc
gccaaagcaggtcgttcttcgctggagtggagagtatctaacttaccctactttcaaaag
caagggtatggaagaatcgcttacaacgactacgagtcaagcgatgagtcagaccgtgac
gtcgtcggctcttctcagtctcagcaaatggcgggttcgactcttgataacatcgaccaa
tggagattcaaacttactatgcttctacggaacggagaagaccaagaagttgtgtccagg
gagaggaaagatcggcgtgattttgatcacatctctgcaatggcaactagaatgggatta
tacagccgtcagtactcgaagatcattgtcattagcaaatctcccttgccgaactataga
cctgatcttgatgataagcgccctcagagagaggtggttttgccttttggcctacaaagt
gaggtagatgcccatctacatgctttcctggatcagaagaaaatgttgattccagagatg
tccaggcctagtagtagtgacagcttagcaaccggttatggaaactacgagaaaccagag
acggtgatgcagaatagtcttgccagggaaagaatactccgtcccagaagtctgcaactt
aggagcaagcaacagcagtgggtggattctccggaaggccagaaaatggtagagttccgc
aaaacacttcctgcatacaaagagaaagaagcactattaagagctatttcagcaaaccag
gtcatagtggtttctggagaaactggctgtggtaaaacaacgcagcttcctcagtacata
ttagaatctgagatcgaggctgcccgtggagctgcttgcagcatcatatgcacacagcct
agaagaatatctgctatttctgtttctgaacgagttgctgcagaacgtggagaacaaata
ggagaatccgttggctacaaagtgaggcttgaagggatgagggggagagacacacgtctt
ctcttttgtacaactggtgttttgcttagaagactacttatagatcgtagcttgaaaggt
gtgactcatgtcgtagttgatgaaattcatgaacgtgggatgaatgaagattttctgctt
attgtcttgaaagatctccttcctcgtcgacctgacctgaagttgattttgatgagtgcc
actttgaacgctgagctcttttcttcttattttggtggtgcaccagccatgcatatccca
gggtttacatatcctgtccgagcccatttcttggaggattttcttgagactactgggtac
aggttgacatcatataatcaaattgatgattatggcgaggaaaagacatggaagatgcaa
aaacaagctcaattcacaaaaaggaaatcccagatatcctctgctgttgagggtgctctt
gaagctgcagacttcaaaggataccagtttcgtactagagactctttgtcatgctggagc
cctgattcgatgggctttaaccttattgagaatgtgctttgtcacatcgtcaaaggagag
agaccgggtgctgttttggtattcatgactggttgggatgatattaactccttgaagaaa
cagctcgaagctcatcatcttctgggagaccccaacaaagttttgcttcttgcctgtcac
ggatccatggccagctctgaacagaggctgatttttgatagacctccagaaggagttagg
aaagtagtgctggccaccaacatggccgagacaagtatcaccatcaatgacgttgtattt
gtggttgattgtggaaaagcaaaagagacgtcttatgatgcgcttaacaacaccccttgt
ctgcttccatcttggatctcgaaggcagctgctcgccaaagaagaggaagagcaggtcgt
gtaatgcctggagagtgttatcacctttatcctagatgcgtctatgatgcttttgctgac
taccagcagccagaactcctgaggactccgttacagtctctgtgtctacaaatcaaaagc
ttaggacttggaagcatttcagagttcctttccagggcactgcaacctcctgaagcttta
tcagtccagaatgctgttgagtatctaaaacttattggtgctcttgatgacaacgaaaat
ttaacagctttagggaaaaatctgtcgatgcttcctgtggagcctaaacttgggaaaatg
cttattttaggagctatcttcaattgtctagatccaataatgacagttgttgctggtctt
agtgtcagagacccattcctgatgccatttgacaaaaaggatctagcagagtcggcaagg
tccaagttctctggccgtgattgcagtgatcatttgacactgattcgagcatacagtggt
tggaaagatgctgaaagaacacgttctggtaacgagtattgctggcagaactttctatct
gcccaaactctaaaggccatggactctatgcggaaacaattcttctttctcctgaaggag
gcttctcttattgataacgttgaaagttgcagtaagctgagctatgatgaacatcttgtc
cgcgccatcatctgtgctggcctgttcccgggagtttgctctgttgttaataaggaaaag
tcaattacgctcaagacaatggaggatgggcaagtgcttctatacacgagttctgtgaat
ggcaatgtacaaaggattcctttcccttggctagtcttcaacgaaaaaatcaaagtcaat
tctgtgtttcttcgagactccactgctgtctctgactcggtgcttcttttgtttggggat
aaagtatcttccggtggatttgatggtcatctcaaaatgctgggaggatatctagagttt
ttcatgaaaccctctttagcatatacatacctttctttaaaaagagagctcgacgagctt
attcagaataagcttgtgaatccaaagcttgatattcaactgtacgacaaactcatgact
gccattagattacttgtgtctgaagaccaatgtgagggcaggttcgtctttggccggaaa
gctctgagccctacaacgacgaagaagttgaaagtagtagggactcagctgcccaacagc
ggcggggaaaacgataagaaccaccttcagacagtgcttgcccgagcaggacatggaaca
ccagtgtacaagacaaggcagctgaagaacaaccagtttcgggccatggttactttcaat
ggattggatttcatgggaaagccatgtagtagtaagaaaaacgcagagaaggatgcagct
cacgaggcgttgctgtggttacaaggcgagtctaagtcgagtttgaatgatcttaaccac
atgtcgacgctcttaaagaaggacaagagtaaaaaatccgcaagggcacctgctagatgg
aattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (14)   
   Pfam (14)   
All databases (30)   

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