KEGG   Brassica oleracea (wild cabbage): 106302101
Entry
106302101         CDS       T04124                                 
Name
(RefSeq) uncharacterized CRM domain-containing protein At3g25440, chloroplastic
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106302101
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106302101
Enzymes [BR:boe01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     106302101
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     106302101
SSDB
Motif
Pfam: CRS1_YhbY
Other DBs
NCBI-GeneID: 106302101
NCBI-ProteinID: XP_013594074
UniProt: A0A0D3D4R5
Position
C7:complement(11607417..11609277)
AA seq 444 aa
MVIPTAARVSTSMSVLLRRNYRQLWSLASSPSSNSIPPHTISSGNLLCKVLLNESCQEPA
WKARYFLTSSSWFHSTPSHETTSNPENSSSQDGVSPTKPKRKKLKGKRAVVRWLKFFRWK
KKKEVERMTAEEKILNKLRKARKKEERLVETMKKLEPSESSETTHDPEILTPEEHFYFLK
MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTQEEVNEIAVELARLTGGI
VLDVHEGNTIIMYRGKNYVQPPTEIMSPRVTLPRKKALDKSKCRDALRAVRKYIPRLEQE
LELLQAQCEATKGDSPSVVKIDDDDDDQRSEELKKIIERSQECFEDEDEQEEEEEELATD
SDLSDIFETDSESENDKAERPLFLEEFEKFPAINNKVGEEEEEEDFGDPGKTKSRDDKED
ESPDFDEVDKMFLRAASLLKKKRR
NT seq 1335 nt   +upstreamnt  +downstreamnt
atggtgataccgacggcggctagggtttcgacatcgatgtcagtactgttacgccgtaat
tatcggcagctatggtcgttggcctcttcccccagctctaattccatccctcctcacact
atcagctctggtaatctcttgtgcaaggttttgcttaacgagtcttgtcaagaacctgca
tggaaagctagatacttcttgacatcctcctcttggtttcattctactccatctcatgag
accacgagcaaccctgagaacagttcgagtcaagatggagtatctcctacaaaacccaag
aggaaaaagctcaaaggtaaacgtgcggttgtgcggtggctcaagtttttccggtggaag
aagaagaaagaggttgaaagaatgactgctgaagaaaagattctcaacaaactaagaaag
gctcgtaagaaagaggaacgacttgtggagacgatgaagaagctggaaccttcagagtca
tctgaaacgacgcatgaccctgagatcttgacacctgaggagcatttctattttctgaaa
atgggtttgaagtgtaagaactatgttcctgttgggagacgtgggatctaccaaggagtg
attctgaacatgcatcttcactggaagaagcatcagacgctacaggttgtcatcaaaacg
tttactcaggaggaagtcaatgagatcgctgttgagttagctaggttgactggtgggatc
gtgcttgatgttcatgaagggaacaccattattatgtacagaggcaagaactatgtccag
cctccgactgagatcatgtctccaagggttactctcccgagaaaaaaggctttggacaaa
tccaaatgtagggatgcgcttcgtgctgttagaaagtatattccgaggcttgaacaagag
cttgagttgcttcaagcgcaatgtgaggctactaagggagactctccgagtgtagtcaag
attgatgatgatgatgatgatcaaaggtcggaagagttgaagaagattatagaaagaagc
caagagtgttttgaggatgaggatgagcaagaagaagaagaagaagaattggcaacggat
tctgacctttctgatatatttgagactgattcggaatcagagaacgacaaggcagagcgg
ccgctttttcttgaggagtttgagaaatttccagctataaacaacaaggtaggagaagaa
gaagaagaagaggattttggggatccagggaaaactaaatcaagagatgataaggaggat
gagtctccagattttgatgaggtcgacaagatgtttcttcgggctgcttcacttttaaag
aagaaaagacgatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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