KEGG   Brassica oleracea (wild cabbage): 106310163
Entry
106310163         CDS       T04124                                 
Name
(RefSeq) polyadenylate-binding protein 3
  KO
K13126  polyadenylate-binding protein
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03015  mRNA surveillance pathway
boe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106310163
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106310163
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106310163
   03041 Spliceosome [BR:boe03041]
    106310163
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     106310163
   mRNA cycle factors
    Stress granule specific factors
     106310163
Spliceosome [BR:boe03041]
 Complex C
  Other components
   Complex C specific factors
    106310163
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 Nup35_RRM MARF1_RRM1
Other DBs
NCBI-GeneID: 106310163
NCBI-ProteinID: XP_013602834
UniProt: A0A0D3DQZ8
Position
C8:23880001..23883520
AA seq 672 aa
MAAAVATGVAPSTMIDQVPSPTAQTSVQVPVSVPVQSPVVAADQTHPNSSLYVGDLDPRV
AEAHLFDLFKHIASVVSVRVCRDQSRRSLGYAYINFSNPNDAIRAMEALNYTPLFDRPIR
IMLSNRDPSTRKSGKGNIFIKSLDASIDNKALFETFSSFGTILSCKVATDVTGQSKGYGF
VQFEKEESAQAAIDKLNGMLMNDKQVYVGHFIRRQERSREENAPTPRFTNVYVKNLPKEI
GEDELRKTFGKFGSISSAVVMRDQSGNSRCFGFVNFEYAEAAAQAVEKMNGISLGDDVLF
VGRAQKKSEREQELRRKFEEERMNRFEKSQGANLYLKNLDDSVDDEKLKEMFSEFGNVTS
SKVMVNPQGISRGFGFVAYSNPEEASRALNEMNGKMIGRKPLYIALAQRKEDRQAHLQAL
FSQIRAPESMQSPMTGFNHPRGGPMHGPPQHMYVGQNGRSSMVPSQPMGYGFQPQFMPGM
RPGSGPRNFIMPYPLQRQTQAGHRMGFGRGATNMPHHIQQQQQLIHHNPSPGMRYMNGAG
NGRNGLELSVSQGTLPPVTPLPIDASSIGIVAPQNHQKAPLLPISKLTSLLASASPADRT
RMLGERLYPLVERQEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLRLSAD
APDHDLGFSTID
NT seq 2019 nt   +upstreamnt  +downstreamnt
atggcggccgcggttgcgacgggggttgcaccgtcgacaatgattgatcaagttccgagt
ccgacggctcagacttcggttcaggttccggtttcggtaccggttcaatctccagtggtt
gcggctgatcaaacgcacccgaattcatcgctctacgtgggagatctagacccgagagtg
gccgaagcacatctgttcgatctgttcaaacatatcgctagtgttgtctcggtacgagtc
tgtcgcgatcagagccgtcgatctttgggatatgcctacatcaatttcagtaaccctaat
gatgctatccgcgcaatggaggccttgaactacactcccctcttcgacaggcccatcagg
atcatgctctcgaaccgtgaccccagcacgcgaaagagcggcaaaggtaacatttttatc
aaaagcctagacgcctctatcgacaacaaggccttgttcgagaccttttcgagtttcgga
accatcctctcatgcaaagttgcaactgacgtgaccggacagtccaagggatacgggttc
gtccagttcgagaaggaggaatctgctcaagcagcaattgacaagctaaacggaatgcta
atgaacgacaagcaagtatacgtgggacacttcattagacgccaagaacgctctcgggaa
gaaaacgcccctacgccgcgtttcactaacgtgtacgtcaagaatctccccaaggagatt
ggtgaggacgagctaaggaagacgtttggtaaatttggatcgatttcgagcgcggttgtg
atgagggaccaaagtggaaactcgaggtgtttcgggtttgtgaactttgagtatgccgaa
gcagcggcgcaagccgttgagaagatgaatgggattagcttaggggatgatgtgttgttc
gttgggagggcgcagaagaagtctgagagagagcaagagctgagaaggaagtttgaggaa
gagaggatgaaccggtttgagaaatctcaaggagcaaatctgtatttgaagaatcttgat
gatagcgttgatgatgagaaactcaaggagatgttctctgagtttggaaatgtaacctct
tccaaggttatggttaatccacaaggaataagcagagggtttggttttgttgcttattcc
aatcctgaagaagcttcaagagccctgaatgaaatgaacgggaagatgataggaaggaaa
ccactttacatagctcttgcgcagcgcaaagaagatagacaagcacatttacaggcgctg
ttttcacagattagagcaccagagtcaatgcaatctccaatgacggggtttaatcaccca
cgaggtggaccaatgcatggtccacctcagcacatgtacgtaggccagaatgggcgttca
agcatggtcccatcccagcccatgggatatggattccagcctcagttcatgcccgggatg
cgtccaggttctggcccacgcaacttcatcatgccttatcctcttcagagacaaactcag
gccggtcatagaatgggatttgggcgcggtgctactaacatgccacatcacatccaacaa
cagcaacaacttatacaccataacccgagcccgggaatgagatatatgaatggtgcgggt
aacgggaggaacggattggaattgagtgtttcacaaggaacgttgcctccagtcacgcct
ttgccaattgatgcttcttcaattggtattgttgctcctcaaaatcaccagaaagctcct
ctacttccaatctctaagctcacttctctcttagcttctgctagtccagctgatcgcaca
cggatgctcggagagcgactatacccacttgtggaaaggcaggaaccacttcacgtggct
aaagtgacaggaatgttgttggagatggatcaggccgagatattgcacctgatggagtca
ccagaggcactcaagtctaaagtttctgaggcattagatgttctcaggctttctgctgat
gcacctgatcatgatcttggtttctctaccatcgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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