KEGG   Brassica oleracea (wild cabbage): 106313264
Entry
106313264         CDS       T04124                                 
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD5
  KO
K03514  non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106313264
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106313264
   03016 Transfer RNA biogenesis [BR:boe03016]
    106313264
Enzymes [BR:boe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     106313264
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     106313264
Transfer RNA biogenesis [BR:boe03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    106313264
SSDB
Motif
Pfam: PAP_assoc NTP_transf_2 PAP_NTPase DNA_pol_B_palm TUTase Polbeta Nrap_D2
Other DBs
NCBI-GeneID: 106313264
NCBI-ProteinID: XP_013606485
UniProt: A0A0D3EAT1
Position
C9:36425691..36428749
AA seq 522 aa
MESEAPAFVYDALPPLSLSDWNQSPATHDESHNYSVYRNEISDLTENTTPVESDTVDFFS
LDVDAGENENGEEFVTPVVASKKSRKRRKDKEAEEPRLETNWFNENSCSKIPMLQLHKEI
VDFSEFLLPTLDEKAQRDAAMDSVRSVIQYIWPDCKVEVFGSYKTGLYLPTSDIDVVILE
SGITNPQLGLKALSRALSQRGIAKNILVIAKARVPIIKFVEKKSSISFDLSFDMENGPKA
AEFIQDAVVKLPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLAMLIAFLKYLKDGRSP
PEHNLGVLLVKFFDFYGRKLNTADVGVSCKKGGSFFSKSNKGFLNPARPGLISIEDPQTP
ENDIGKSSFNYFQIRSAFSMALSTLTNTKAILALGPNRSILGTIIRPDRILLERKGGKNG
DVTFNCLLPGAGEPLPMSANGKSNGGLFCNWQLEEDEEGSFPRGDAANGDNTPVLVDTPG
KVTTKESSRKKKSKSKKKKMVDDDDGEEEEPSSKKRRRKNKF
NT seq 1569 nt   +upstreamnt  +downstreamnt
atggagtctgaagctccagctttcgtatacgacgctcttcctccacttagcctctcagat
tggaatcagtctccagctacgcacgacgaatctcacaactattctgtttaccgcaacgag
atctctgatctaaccgaaaacacaacgccggtggagtcagacacggttgatttcttctca
ctggacgtcgacgccggggagaatgagaacggcgaagaatttgttacgccggttgtggcc
tcgaagaagagcagaaagaggaggaaagacaaagaagctgaagagcccagattagagact
aactggtttaacgagaacagctgttccaagatcccaatgcttcaactgcataaagagata
gttgatttcagcgagtttctcttaccaactctagatgagaaagcgcagcgtgatgcagca
atggatagtgttagaagcgttattcaatatatctggcctgattgcaaggtagaagttttt
ggatcatacaagacagggctttatcttccaacaagtgatatcgatgtggtcattttggag
tcgggtatcacaaatcctcaactaggtctgaaagcactctccagagcattgtcacaaagg
gggattgcaaagaatattctggtgattgctaaggctcgtgtaccaattatcaagttcgtc
gaaaagaaaagcagtatttcatttgatctaagttttgatatggagaatggaccaaaggca
gctgagtttatacaggatgctgtagtcaagttgcctcctttacgaccattgtgtctaatt
ctgaaagtatttctacagcagagagaactcaatgaggtgtacagtggtggaattggttca
tatgctcttctagcaatgctcatcgcttttctcaagtacctcaaagatggtcgaagccca
ccagagcataacttgggagttctcttggttaagttcttcgacttttatgggcgaaaatta
aacaccgcagatgtgggtgtatcttgcaagaagggaggttctttcttttcaaagtccaac
aaaggtttcctgaacccagcccggccagggctcatctctatcgaggatccacagacacca
gagaatgacattggcaagagctcattcaactactttcagattcgatcagcattttcaatg
gccttgtctactttaacaaacacgaaagctattctagcattaggaccgaaccgaagcatt
ctcggcacaataatcagaccagaccggattctgttagagcgcaaaggtgggaaaaacggg
gacgtcactttcaactgcttgcttcccggagctggagagccattgccaatgtcggctaac
ggcaaaagcaatggtgggcttttctgcaactggcaactcgaagaagacgaggaaggctcg
tttccaagaggggatgctgcgaacggagacaatactcctgtgctagttgacactcctggt
aaggttactacgaaagagtcttcccggaagaagaagagtaagagcaagaagaagaagatg
gtggatgatgatgatggtgaagaagaagaaccgagttcgaagaaaagaagacggaagaat
aagttttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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