KEGG   Brassica oleracea (wild cabbage): 106319336
Entry
106319336         CDS       T04124                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106319336
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:boe03021]
    106319336
Enzymes [BR:boe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     106319336
Transcription machinery [BR:boe03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     106319336
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 zf-C2HCIx2C
Other DBs
NCBI-GeneID: 106319336
NCBI-ProteinID: XP_013613080
UniProt: A0A0D3E3T5
Position
C9:complement(9784470..9791978)
AA seq 1459 aa
MEEKCEELQVPIGTLKSISFSISNNKDLKNMSAMEVEAANQVTDSWLGLPNRDDICKSCG
SKDRKVCEGHFGVINLRYPVINPHLLKEVATLLNKFCPGCKYTKKKQSQSQSQNPEDRPD
RCRYCISNTDYPLMKFRVTTKEAFRRSGIVCEVSEDNLVKLSKRGLSALPPDYWEFMPKD
PNIDESCLKPSRRILTHAQVYALLSGIDERVIRKDIPMFDSLPLASFPVTPNGHRVSEMV
TQFTGPRLVFDERTRIYKKLVGFEGNGLELSSRVMECIQYSRLFSENVSPSQESANPYQK
KSDTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPYLKLNEIGIPRRIAERLQVSENLNDW
NRERLVTSCFHKLLEKGETHVRRGGRLVGIRAIDDLQTGDSILRTLKDGDTVLMNRPPSI
HQHSLIAMSVKVLPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKAELDELVALDK
QLVNRQNGRNLLSLGQDSLTAAYLVNVETNCFLNRAQVQQLQMYCPYELLPPAIIRGSRS
EPQWTGKQLFGMLFPPGFEYAYPLNNVVVTNGELSSSSDGSGWLRDGEGNFIQGLMKHDK
EKVLDIIYSAQEMLSQWLLNRGLSVSLSDLYFASDTQSRRNLTEEISYGLQEAEQVCNKQ
QLMVESRRDFLAVNGEDMVVADDLELFCYERQRSATLSKLAVSAFKDAYRDVQALAYRYG
DQSNSFLVMSKAGSKGNMGKLAQHSMCIGLQNSSVALSFGFPRKLTCASWNDPNSPLRGA
KGEDRTAHDSFVPFGVVESSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSRKLMFFM
RDIYAAYDGTVRNSFGNHLVQFRYESSDDAEEDMTGEAVGSLSACALTEAAYSALDQPIS
LLETSPLLNLKNVLECGSKKGLKEQTMSLYLSETLSKKKHGFEYGALDIKSHLEKLCFSE
IVSTSMMIFSPRTNTRMPMSLWVCHFHISKKVLKQNQLDLESVVSSLNKQYANRKKELKL
DVIDLDIQSKNHCSWDDKAMEDDRVCITVTVLEASRHDSLELDAIRLVLIPFLLDSPVKG
YREIKKVDILWVDRPKAPQRNKKGFAGELFLKVTMHGVRGKRSFWSALLETCLPIMDMID
WTRSHPDNIRQCCSVYGIDAGRSIFLADLESAVSDTGKAMLREHLLLVADSLSVTGEFVA
LNPKGWSRQRQAESTPAPFAQACFSNPSQCFLKAAKEGVTDELEGSIDALAWGKVPSFGT
GDQFEIIISPKNHGFSTPVVDVYGFLSRTATLPKKKPVRATSSSLPKSDEFTVQPFPLLD
TALSKAVKTLDGKGLTRSQLRMIFTWDDMEKLSRSLKRILYNYEIDATLNELDGRLLMMA
LLFHPNRDEKIGPGFKGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKR
VNFYKAKYLRNGTVQPGAV
NT seq 4380 nt   +upstreamnt  +downstreamnt
atggaggaaaaatgtgaggagcttcaggtgcctattgggactctaaagtcaataagcttt
agcatttcgaataacaaagatctaaaaaacatgtctgccatggaagttgaagcagcgaat
caagtgactgattcatggttagggctcccaaatcgggatgatatatgcaaatcatgtggc
agcaaagatagaaaagtttgcgaagggcattttggtgttattaacctcaggtatccggtg
attaacccgcatttacttaaggaggtagctacattgttgaacaagttctgccctggatgt
aaatacacgaagaaaaaacagtctcagtctcagtctcagaatcctgaagaccggcctgac
agatgtagatattgcatttcaaatacagattaccctctaatgaagttcagggtaacaaca
aaagaagcctttaggcgatctggaatcgtttgtgaagtgagtgaagacaatctggttaag
ctcagtaaacggggactatcagcactacctccagattattgggagtttatgcctaaagac
ccaaatatcgacgaaagctgtttgaaaccaagcaggcggattctaacgcacgcacaggtt
tatgcactgttgagtgggattgatgagagggtgatcaggaaggacatccccatgttcgac
tctcttcctctggcatcttttccagttacgccaaacggtcatcgtgtatccgagatggtc
actcagttcaccggtcctcgactagttttcgatgaacgaactcgtatctacaagaaacta
gttggcttcgaaggaaatggtcttgagctgagttctcgtgtgatggaatgcatacaatac
tcaagactcttttcggaaaacgtgtctcctagtcaagaatctgcaaacccttaccagaag
aagtcagatactcccaagctatgcggtctaaggttcatgaaagatgtgcttctcggtaaa
agaagcgaccacacgttccggacagtggttgtcggcgacccgtatctcaagctcaacgag
atcggcatacctcggaggatcgcagagaggcttcaagtatccgagaatctcaacgactgg
aacagagaacgcctcgtcacctcctgtttccacaagctcctcgagaaaggagagactcac
gtgaggagaggaggtcgcttagtgggtatccgagccatcgacgatctccaaacgggagac
agcatcttacgtacgcttaaagacggagacacggtgttgatgaacagacctccttccatt
catcagcactcgctcatcgcaatgtctgttaaagtcctccccactacctccgtcgtctcg
ttaaaccccatctgttgcttaccctttcgtggtgacttcgatggggactgtcttcacggg
tacgtccctcagtctatccaagccaaggctgagctcgacgagctcgtggctttggacaag
cagcttgttaacagacagaacggtcgtaacttgctgtcgttgggacaggacagcttgacg
gctgcgtatctggttaacgtcgagacgaactgtttcctgaaccgagctcaggtgcagcag
cttcaaatgtattgtccctatgagcttcttccgcctgcgatcatccgaggttcgagaagt
gagccgcaatggacggggaagcagctgtttgggatgcttttccctccagggttcgagtac
gcttaccctctgaataatgtggttgtaaccaacggggagctttcgtcttcttccgatggg
tctggttggttgcgtgacggagaaggaaacttcatccagggtttgatgaagcacgataaa
gagaaagttcttgatataatctactcggctcaagaaatgctctctcagtggctgctgaat
cgaggacttagtgtttctctatctgatttgtacttcgcatctgatacacagtctcggaga
aacttaacggaggagattagttacggtttgcaagaagctgagcaagtctgcaacaagcag
cagctcatggtcgagtcccgcagagacttcctcgcggttaacggagaagatatggtcgtc
gctgatgatttggagctgttctgttacgagagacagagatcagctaccttaagcaagctc
gcggttagtgccttcaaggatgcgtatagagacgtccaggctctggcgtatagatacgga
gaccagtcgaactcgtttctcgtcatgtccaaagctggtagcaaagggaacatggggaag
ctcgctcagcacagtatgtgcattggacttcagaactcatcagttgcgttgtccttcggg
tttccacggaagctgacttgcgcctcgtggaacgacccgaacagcccgcttcgaggcgcg
aaaggagaagaccgaacggctcatgactcttttgttccctttggtgtcgttgagagttcg
tttctgactggtctgaatccgttggagtcttttgttcattccgtgacgagccgagatagc
tccttcagcggtaatgctgatctcccggggacgcttagcaggaagctgatgttctttatg
agggacatatacgctgcttacgacgggacggtgaggaactcgttcgggaaccatttggtt
cagtttcgttatgagagtagtgatgatgcagaagaggacatgaccggtgaagcagttgga
tcgctttctgcttgcgctctcaccgaggctgcttacagcgcgcttgaccagcccattagc
cttcttgagacttctcctcttctgaatcttaagaatgtgttggagtgcgggtcgaagaaa
ggtctaaaggaacagacaatgtctttgtacttgtctgaaacactttctaagaagaaacac
gggttcgaatacggggcactggacatcaagagccacttggagaaactgtgtttctcagag
attgtttcaacgtccatgatgatattctctccgaggactaacacaaggatgcctatgagc
ttgtgggtttgccattttcatatctccaagaaagtactgaaacagaaccaactggacctg
gaatctgttgtctcttcattaaacaagcagtatgcgaacaggaagaaagaactgaagctt
gatgtcatagatttagatatacaaagcaaaaaccactgctcttgggatgataaggcaatg
gaagatgatagagtctgcatcacagttactgttctcgaagcctccaggcacgattctttg
gagcttgatgctattcgccttgtcttgatcccttttcttctcgactctcctgtcaaaggc
taccgagagattaaaaaggtggatatcttatgggttgacagaccaaaagctccccaaagg
aataagaaaggctttgcgggtgagcttttcttgaaggttacaatgcatggagttcgtggc
aaaaggagcttctggagcgctcttctcgaaacctgtcttcccattatggatatgatcgat
tggacaagaagccatcctgacaatatccgacagtgctgctctgtttacggaatagacgct
ggacgtagcatcttcctagcggatttggagtctgctgtgtcggatacaggcaaggcgatg
ctgcgggaacatctgcttcttgtagctgattccctctcagtcaccggagagtttgtggcg
ctaaaccccaaaggttggagtagacaaagacaggccgagtccactcctgctcctttcgct
caagcgtgcttctcgaacccaagtcaatgctttctcaaagcagccaaggaaggtgtcaca
gacgagcttgaaggatctatcgacgcattggcttggggcaaagttccttcctttggaact
ggagatcagttcgagattatcatctcccctaagaatcatgggtttagtacaccggtggta
gacgtgtatggctttctcagtaggacggccacgcttccaaagaaaaagcctgtccgtgca
acaagctcctccttgcccaaatcagacgagttcacggtccagccattccccttgctcgac
acggctctctcgaaagcagtcaagacactcgatgggaaaggactcaccaggtcgcagctc
agaatgatctttacatgggacgacatggaaaagctttctcggtcgctgaagcgcattctc
tacaattacgagattgatgctacgttgaatgagttggacgggagacttctgatgatggct
cttctcttccaccccaacagagatgagaagataggaccaggcttcaaaggaatcaaggtg
gctaattctaagcacgggaatgctcgttgctttgaggtggtgagaacagacggaacaact
gaagatttctcgtaccacaagtgtgtgttgggagcgacagagatcattgcccctaagagg
gtaaacttctacaaggcgaagtaccttaggaacggtacggtgcagcccggtgctgtctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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