KEGG   Brassica oleracea (wild cabbage): 106327683
Entry
106327683         CDS       T04124                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
boe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106327683
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106327683
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106327683
   03041 Spliceosome [BR:boe03041]
    106327683
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106327683
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     106327683
Spliceosome [BR:boe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    106327683
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 106327683
NCBI-ProteinID: XP_013621364
UniProt: A0A0D3E0V8
Position
C2:47447333..47449089
AA seq 89 aa
MASNNPSQLLPSELIDRCIGSKIRVIMKGDKELVGVLKGFDVYVNMVLEDVTEYEITAEG
SRVTKLDQILLNGNNIAILVPGGAPEDVE
NT seq 270 nt   +upstreamnt  +downstreamnt
atggcgagcaacaatccttcgcagcttcttccatcagagctaatcgacaggtgcataggg
tcgaagataagggtgataatgaaaggagacaaggagctcgtcggtgttctcaaaggcttc
gacgtttacgtcaacatggtccttgaggatgtcaccgagtatgagattacagctgaagga
agtcgggtcacaaagcttgatcagattctcctcaacggcaacaacatcgccattttggtg
cctggtggagctccagaagatgtagagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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