KEGG   Brassica oleracea (wild cabbage): 106328436
Entry
106328436         CDS       T04124                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106328436
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:boe03041]
    106328436
   03009 Ribosome biogenesis [BR:boe03009]
    106328436
Spliceosome [BR:boe03041]
 Complex A
  U1 snRNP components
   U1 related factors
    106328436
 Complex B
    106328436
Ribosome biogenesis [BR:boe03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    106328436
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 106328436
NCBI-ProteinID: XP_013622330
Position
C3:64212987..64216354
AA seq 499 aa
MSRYDSRTGDSTSYRDRRSDSGFGGASAYGSSASKRESSSVGDESPKKPDLDGLTPFEKN
FYVESPSVAAMTEAEVEEYRKKREITVEGRDIPKPVKSFRDVGFPDYVLEEVKKAGFTEP
TPIQSQGWPMALKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPILAPGDGPIVLVLAPTR
ELAVQIQQEASKFGSSSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNT
NLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNP
YKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITR
QLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFP
GSLEDYVHRIGRTGRAGAKGTAYSFFTAANARFAKELISILEEAGQKVSHELASMGRSTA
PPPPGLGGFRDRGSRRAWS
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgagtcgctacgatagccggaccggcgactccacctcctaccgtgaccgtcgaagtgac
tcagggtttggtggagcttcagcatacggaagctcagctagtaaaagggagagtagtagt
gttggcgatgagtctccaaagaagcctgatttggatggtttgactcctttcgagaagaat
ttttatgttgagtctccctctgtggcggctatgacggaggcggaagtggaggagtatcga
aagaagagggagattactgttgaaggtcgtgatattcctaaacctgtcaaaagctttcgt
gatgttggctttcctgattatgttttggaagaggttaagaaggctggttttactgaacct
acacctatacaatcacaagggtggccaatggcgttgaagggacgtgatctcattggcatt
gctgaaactggctctggaaagactctttcttacttgctacctgccatagtccatgtgaat
gctcaaccaattttagctcctggagacggcccaatagtcttggttcttgctcctacacgt
gaactggctgtgcagatacagcaagaagcgtctaagtttggttcatcgtcaaagattaag
agcacttgcatttacggtggtgttccaaaagggcctcaagtgcgtgatctccagaaaggt
gtggagattgttatagctactcctgggaggttaatagacatgatggaatcgaacaacaca
aacttgcggagggttacgtatcttgttttggatgaggctgatcgaatgctggatatgggg
tttgaccctcagatccggaaaattgtctcacatattcggccagaccgtcaaactttgtac
tggagtgctacttggccaaaggaggtggaacaactctctaagaagtttctttataaccca
tacaaagtgataataggttcttcagatttaaaagctaaccgtgctatccgtcaaattgtt
gatgtcatctccgaaagccaaaagtataacaagttggtgaagttgcttgaagacataatg
gatggaagcaggattcttgtcttccttgacaccaaaaagggctgtgaccaaatcactcga
cagcttcgcatggatggttggcctgctttgtcaatacatggtgataaaagtcaagccgag
agagattgggttctctcggagtttagatcaggcaaaagccctataatgactgctacagat
gttgcagctcgtggattagacgttaaagatgtgaagtatgtgataaactatgacttccct
ggatcactggaggattatgttcacaggattggacgaactggtagagctggggccaaagga
acagcttacagtttcttcacagctgcaaatgcgagattcgccaaagagcttatcagcata
ctagaagaagctggacagaaagtgagccacgaattagcttcaatgggtcgcagcactgct
cctcctcctccagggcttggaggatttagagaccgtggaagcagaagagcttggagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system