KEGG   Brassica oleracea (wild cabbage): 106334735
Entry
106334735         CDS       T04124                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1 isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106334735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:boe03021]
    106334735
Enzymes [BR:boe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     106334735
Transcription machinery [BR:boe03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     106334735
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 106334735
NCBI-ProteinID: XP_013628526
UniProt: A0A0D3B5Z0
Position
C3:13226957..13236485
AA seq 2056 aa
MEEASSSDILEAEIVGISFALATHRQIRLASISDAGINHASQLSNAFLGLPLEFGKCEAC
GATEPDKCEGHFGYIHLPVPIYHPAHVSELKQMLSLLCLKCLKIKKIKSTSSGLAERLLG
VCCEEASNITIKDKSSDGASYLQLKLPSRTRLQEGFWNFLERYGYRYGSDHTRPLLAREV
KEILRRIPEETRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEVSDGSNSMSVDPSRIELK
DVLRKVVAISNSRSGETNFESHRAEANEMFRVVDTYLQVRGTAKPTRNIDMRFGVSKISD
SSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAFRNVNEVGIPMEIAHRITFEERVSVHNI
GYLQELVDNKMCLSYTQGSTTYSLRDGSKGHTVLKPGQIVHRRVMDGDVVFINRPPTTHK
HSLQALRVYVHEDNTVKINPLMCGPLSADFDGDCVHLFYPQSLTAKAEVLELFSVDKQLR
SSHTGQLILQLGLDSLLSLRVMMEQVFLDKASAQQLAMYGSRSLPSPAVVKSSKSGPAWT
FFQILQLAFPERLSCRGDGFIVGGSDLLSFDFGVDALASIINGIVTAIMVEKGPKEALAF
FDSLQPLLMEHLDPQGFSLSLEDLSMSREDMGVIHNLIVREISPMVSRLRLSYEDELQLE
NSIQKVKEVAANFMLKSYSMRNLIDIKSNSAINKLVQQIGFLGLQLSDKKKLYTKTLVED
MAQFYKKKYVSTSSSGDFGIVKGCFFHGLDPYEEMAHSVAAREVIVRSSRGLAEPGTLFK
NLMAVLRDIVITNDGSVRNTCSNSIVQFKYELSSDNENQGLFEAGDPVGVLAATAMSNPA
YKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECRCGKKYCQENSAYTVR
NKLKKVSLKDTAVEFLVEYRKQQAISEIFGMDICLHGHIHLNKTLLEGWNISMQDILQRC
EDAINSLVQKKKKKAEDFKKMNLSVSECCSFRGPGSSKDSDMPCLMFSSYNATDPDLERT
LDVLCNTIYPVLLETVIKGDPRIASANIIWNSPETTTWIRSRHASRRGEWVLDVTVEKAD
VKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRKVS
KGVLKEHIILVANNMTCSGDMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEK
CHKDSLSTVVGSCSWGKRVDVGTGSQFELLWNKKETGLENDDETDVFSFLQMVRSTKTGD
AYVSSPGFDVTEEEMAEWAESPERDSALGEPKFDDSAEFQNLLDEGKASESKWDNGSLWE
NGCSSGSEWGVSKNAGGEENTQSGWGKAANVENEDASSGWNSKKDAQEATNTDSWGAWGS
KTKDDAENATPNWGTKPAQNDSVVIENGEPSSDVWGPKAVSDKPWGKKNSETEPAPAAWG
KKNSESESAAAAWGSSDKKNTGTESDAAGWGSAYKKNPETELNAAAWGSGAKMNKETEPA
PAAWGSWGKKSSETVSGGADWGIRGKRVSETESGAGGWASRNRSLENQSGGATWGSRDKS
KFETESGGAAWGSQAKNNSETEPGSGAAAWGTWDKKKPETETGGGGAAWGSQAKNNSETE
SGSSAAAWGTWDKKKSETELVDGAWGSQAKKNSETESGAGASTWGAWDKKKPETETGGGG
AAWGSQAKNNSETESGSGGAAWGKKKSETDSGGGAAWGSQAKKNSESQLGAANWGSKNTN
NSENGSDSAAWGKKKNSEAEPTSVAWGSWGQPSPPASDKDAQEDDGNPWVSLKATNSGEK
EGNETSQWGVPNKRYPSAGSQSQGGGGGADWKRNRPPRTPGSESILGPMFTATRQRVDMF
TSEEQELLSDVDPVMRRLRKIMHQSGYTDGEPISDEDKTYVLEQILNYHPDKDAKLGPGL
DFITVDKHTTFTESRCFFVVSTDGTKQDFSYRKCINNYLVEKHPNLAEEFIAKYFRKRDN
ENRDKNSQEATPPGEQESQTQPIDNGSQDSQPQPIGNEGGDTQPQSQAEDTQPQSQIEDI
QPIGNGGEDSQTEPQA
NT seq 6171 nt   +upstreamnt  +downstreamnt
atggaagaagcgtcttcctcagatattctagaagcagagattgttggaatctcttttgct
cttgctactcaccgtcagatccgtctagcatccattagtgacgctgggatcaaccatgct
agccaactctctaacgcattcttggggttacctctggagtttggtaaatgtgaagcttgc
ggtgccactgagcctgataaatgtgaaggtcattttgggtatattcatctgcctgtgcca
atataccatcccgctcatgttagtgagttgaaacagatgctgagccttctctgcttgaag
tgtctcaagataaagaagattaagagcacaagttctgggcttgcggagcgtttgctaggc
gtctgttgtgaggaagcttcgaacatcacaattaaagataaatcatcagatggtgcctca
tatctacaactgaagctcccatctagaacaagactgcaggaaggcttctggaatttcctg
gaaagatatggttaccgctatggaagcgaccatacgaggcccctgctagcaagagaggta
aaggaaattttaagacggattcctgaagaaacaagaaagaagctcacagcaaagggacat
attccccaagaaggatacatactagaataccttccagtccctcctaactgtctgtcagtg
ccagaagtttctgatggttccaactccatgtcggtggacccgtctagaattgagttaaag
gacgttctcaggaaagtggtagcgataagcaactctaggtctggcgagacgaactttgag
tcgcatagagctgaagccaatgaaatgtttagagtggtggatacctatcttcaggtgagg
ggtactgcgaagccaacaagaaacattgacatgagattcggggtgtccaagatctcggac
agttcttcctcaaaagcttggacagaaaagatgagaacacttttcattcgaaaaggttca
ggcttctcttctcgcagcgtcatcactggagatgccttcaggaatgtgaacgaggtgggg
atccctatggaaattgcacatcggatcacatttgaggagagagttagtgtccacaacatt
ggatatctacaagagctagtggacaacaagatgtgcttgagctatacccaaggctctaca
acctattctctgagggacggttccaaggggcacacagtccttaaacccgggcagattgtg
catcgcagggtcatggatggggatgttgtgtttatcaaccgtcctcccacaacacataag
cattctctgcaagcacttcgggtgtatgttcatgaagacaacacggtgaagatcaatccc
ctgatgtgtggccctctcagtgctgattttgatggtgattgtgtccatctgttctacccc
cagtctctcacagctaaggcagaggtactggagctcttttcagtggataagcaacttcgc
agctcacataccgggcagctgattctgcagctgggtttggattctttgctgtctctgagg
gttatgatggagcaggtgtttttggacaaagcatctgcccaacagttagctatgtatggc
tctcggtctctcccatcaccagctgtagtgaagtccagtaaatctggcccggcttggaca
tttttccagatactgcagcttgcctttcctgaacgtcttagttgcagaggtgacgggttc
atagttggtggaagtgatttgctgtcctttgattttggggttgatgcgctggcgtctata
atcaatggaattgtaaccgcaatcatggtggagaagggtccaaaggaagcattggcattc
tttgattcactgcagccgctactgatggaacatctagatcctcagggatttagtttaagt
ctggaagacttgtccatgtctagggaagacatgggagttattcacaatctcatcgttcgg
gagatttctcctatggtgtctaggttgaggttatcgtatgaggacgaactccaactagag
aacagcatccagaaagtgaaggaagtggctgctaatttcatgctgaagtcgtattcgatg
aggaacttgattgacatcaagagcaactcagcaatcaacaagctggtgcagcagattggc
ttcctgggtcttcagctttcagacaagaagaagttgtacacgaagactctggtggaagac
atggctcagttttataagaaaaagtatgtcagtacttcttcctctggagattttggaatt
gtgaagggctgcttttttcacggacttgatccttatgaagagatggctcattcagttgcg
gcaagggaggtaattgtccgctcttcaaggggattagctgagcctggtacactcttcaag
aatctgatggctgttctgcgagacatagtcatcaccaacgatggctctgttagaaataca
tgcagtaactccatcgtgcagtttaagtatgaactgagttctgacaatgagaatcaaggt
ttatttgaagcgggagaccctgttggagtattggcagctaccgccatgtcaaatcccgcc
tataaagctgtgcttgattcttccccaaatagcaattcttcctgggagctaatgaaggaa
gttctactctgcaaagtcaacttccaaaacactaccaatgatcggcgtgtgattctttat
ctgaatgaatgccgctgtgggaaaaagtactgccaagagaattctgcttacacagttagg
aacaagctgaagaaagttagtctgaaagatactgcagtggagtttctagtcgaatacaga
aagcaacaagcgatttcagaaatttttggaatggatatatgcctacatggccatattcat
cttaacaagacattgttggaagggtggaacatcagcatgcaggacatacttcaaaggtgc
gaggatgcaatcaactcactagtccaaaagaagaagaagaaagctgaggactttaagaaa
atgaatttgtctgtcagtgaatgctgctctttccgaggtccaggctcgagcaaagattct
gatatgccgtgcttgatgttttcctcctacaatgccactgatcctgatctggaaagaact
ctggatgttctctgcaatacaatatacccagttctgctcgaaacagtgatcaaaggcgat
ccacggattgcctcagcaaatataatctggaatagtccagaaacgactacctggatccgg
agtcgtcatgcatcccgccgaggagaatgggtattggatgtcaccgttgagaaagctgat
gtcaagcaaagtggtgatgcatggagggttgtgattgactcatgtctttcagttcttcat
ctaatagacacaaaacggtcaatcccatattccataaagcaagttcaagagctgcttggt
ttgtcctgcgcctttgagcaagctgttcagcgtctctcagcttcagtgagaaaggtctcc
aaaggagttctgaaagaacatatcattctcgtggcaaacaacatgacctgttcaggggat
atgctaggtttcaattctggaggttacaaggctttgactcggtccttgaacatcaaggcc
ccattcacagaagcaactcttattgcgccaaggaagtgtttcgagaaagcggctgagaaa
tgtcataaagattctctatcaacagtcgttgggtcttgttcttggggaaaacgcgtggat
gttggtacaggttcgcagtttgagcttctatggaacaaaaaagagactggtctggagaat
gatgatgaaactgatgtattcagctttctccagatggtaagatccaccaaaactggagat
gcatacgtttcttcccctggttttgatgtcacagaggaagaaatggcggaatgggctgag
tctcctgagcgagactctgctcttggagagcccaagtttgatgacagtgctgagtttcaa
aatctacttgatgaaggcaaggcatcagaatccaagtgggacaacggttctctttgggag
aatggttgcagtagtggctcagaatggggagtctcgaaaaacgcaggtggtgaggagaac
acgcagtctggttggggaaaggctgcaaacgttgagaatgaagatgcttcgtctggttgg
aacagtaaaaaagatgctcaagaagctaccaatacagattcatggggcgcttggggatca
aagaccaaagatgatgctgaaaatgcaacaccgaactggggaacaaaaccagctcaaaat
gattctgttgtcatagaaaacggtgagccttcttctgacgtttggggacccaaagctgtt
tcagacaaaccttggggtaaaaagaactctgaaactgagccagctcctgctgcatggggt
aaaaagaactctgaaagtgaatcagctgctgctgcttggggctccagtgacaaaaagaac
acgggaactgaatcagacgctgctggttggggctctgcttacaaaaagaacccggaaact
gaattaaatgccgctgcttggggttctggggccaaaatgaacaaagaaacggaaccagct
cctgctgcatggggttcctggggcaaaaagagctcagaaactgtatcaggtggtgcggac
tggggtattaggggcaaacgggtttctgaaactgaatcaggtgctggtggttgggcttcc
cggaaccggagcctggaaaatcagtcaggtggtgctacatggggttctagggataaatct
aaatttgaaactgaatcaggtggtgctgcatggggttctcaggccaaaaataactctgag
actgagccaggctcaggtgctgctgcttggggtacttgggacaagaagaagccagaaact
gaaacaggtggtggtggtgctgcttggggttctcaggctaaaaacaattctgagactgag
tcaggctcaagtgctgctgcttggggtacttgggacaagaagaaatcagaaaccgaatta
gttgatggtgcttggggttctcaggctaaaaagaactctgaaactgagtcaggcgcaggt
gcttctacttggggtgcttgggacaagaagaaaccagaaactgaaacaggtggtggtggt
gctgcttggggttctcaggccaaaaataattctgaaactgagtcaggctcaggtggtgct
gcttggggtaagaagaaatcagaaactgattcaggtggtggtgctgcttggggttctcag
gccaaaaagaactctgaaagtcaattaggtgctgctaattggggttctaagaacacaaac
aattcggaaaatggatcagattctgctgcttggggtaaaaagaagaattcagaagctgaa
ccaacttctgttgcttggggttcttggggacagccaagtccccctgcttcagacaaggat
gcccaagaagatgatggaaacccgtgggtatcattgaaggcgaccaatagcggagagaag
gaagggaatgagacaagtcagtggggagttccaaacaagagatatccatctgctggctca
cagtcacagggtggtggtggcggcgcagactggaagaggaaccgtcctcctaggacccct
ggatctgagagtattctgggtccaatgttcacagcaacaagacagcgcgtagacatgttc
acctctgaggagcaagagcttctctcagatgtcgatccagtcatgagaagactcaggaaa
ataatgcatcagtccgggtacactgatggagaaccaatctcggatgaagacaagacatat
gtactggagcagattttgaattaccatccagacaaagatgctaagcttggtcccggtctt
gatttcatcacggttgataagcacacgacgttcacagagtccaggtgcttctttgttgtc
tccactgatgggacgaaacaagatttttcataccggaagtgcatcaacaactatctggtg
gagaagcacccaaacctagctgaagagttcatcgcaaagtacttcagaaagagggacaat
gaaaacagagacaagaacagccaagaagccacaccacctggggaacaggagtctcagact
cagcctattgataatggaagccaagactctcagcctcagcctattggtaatgaaggtggc
gacactcagcctcagtctcaagctgaagacactcagcctcagtctcaaattgaagacatt
cagcctattggtaatggaggtgaggactctcagacagagcctcaggcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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