KEGG   Bipolaris oryzae: COCMIDRAFT_6274
Entry
COCMIDRAFT_6274   CDS       T03125                                 
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
bor  Bipolaris oryzae
Pathway
bor03018  RNA degradation
bor03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bor00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCMIDRAFT_6274
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCMIDRAFT_6274
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bor03019]
    COCMIDRAFT_6274
   03041 Spliceosome [BR:bor03041]
    COCMIDRAFT_6274
Messenger RNA biogenesis [BR:bor03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     COCMIDRAFT_6274
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     COCMIDRAFT_6274
Spliceosome [BR:bor03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    COCMIDRAFT_6274
SSDB
Motif
Pfam: LSM FoP_duplication
Other DBs
NCBI-GeneID: 19124906
NCBI-ProteinID: XP_007689065
JGI: Cocmi1_6274
UniProt: W6Z371
Position
Unknown
AA seq 136 aa
MSERGAFRGRGGGRGGDRGARGGGRGGGGGGGGGGAHAGGQTERPKKENILDLSKYMDKQ
ITVKFSGGREVIGTLKGYDQLMNLVLDEVKEALTDEDGNIRYRKLGLIVARGTLLVVISP
VDGSEEIANPFLQEEE
NT seq 411 nt   +upstreamnt  +downstreamnt
atgtctgagcgaggcgcatttcgcggccgaggcggtggccgaggaggcgaccgcggtgca
aggggcggcggtcgtggaggaggtggaggcggcggcggtggaggagcacacgctggcggc
cagacagagcgccccaagaaggaaaacattctcgacttgagcaagtacatggacaagcaa
attaccgtcaaattcagcggcgggcgagaagtcattggcacattaaaaggctacgaccag
cttatgaaccttgtcctcgacgaggtcaaagaggctcttacagacgaggatggcaacatc
cgataccgcaagctcggcctcatcgtcgcacgcggcaccctgctcgtcgtcatctccccc
gtagacggaagcgaagaaatcgccaaccctttcttgcaggaagaagagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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