KEGG   Butyrivibrio proteoclasticus: bpr_IV123
Entry
bpr_IV123         CDS       T01292                                 
Symbol
polC2
Name
(GenBank) DNA polymerase III C polC2
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
bpb  Butyrivibrio proteoclasticus
Pathway
bpb03030  DNA replication
bpb03430  Mismatch repair
bpb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bpb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    bpr_IV123 (polC2)
   03430 Mismatch repair
    bpr_IV123 (polC2)
   03440 Homologous recombination
    bpr_IV123 (polC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpb03032]
    bpr_IV123 (polC2)
   03400 DNA repair and recombination proteins [BR:bpb03400]
    bpr_IV123 (polC2)
Enzymes [BR:bpb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     bpr_IV123 (polC2)
DNA replication proteins [BR:bpb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     bpr_IV123 (polC2)
DNA repair and recombination proteins [BR:bpb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     bpr_IV123 (polC2)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T DNA_pol3_finger PHP DNA_pol3_a_NI HHH_6 DEDDh_C tRNA_anti-codon RNase_H_2 DNApol_Exo DUF615
Other DBs
NCBI-ProteinID: ADL36488
UniProt: E0S506
Position
pCY186:complement(119083..123555)
AA seq 1490 aa
MNRMFFEAFPMLKVDDDIFNDMKSVEIEKISSTKKHDFIRIYIKSSILIEKSTIYKIEKS
IQDQLFSGVNVTVKVYEKFTLSSQYTPKYLMDFYSESIFLEFKNYDPIEHTIIKRATFEY
PDDSNVNICLEENVITRKKAQDIKRVFEKIFNERCGLNVNFNITYREAVERTKPQYTYDA
VHIEKGPEIVEVDAIKVVESRSEKVEKKQDSNWSNEKSKQDIKKGATFAKGKFSKIPDDP
SIIYGRNFDEEITQIIDIEGAIGEIVVRGQIIKYERKDIKNEKAILMFAITDFTDSIKVK
IFAKQEQVAKLEEKIHVGAFIKLKGIAALDNFDHEVSIQSVVGIKEIPDFTTKRVDNAPR
KRVELHCHTKMSDMDAVSSAEDIILQAYKWGMPGIAITDHAVVQGLTEGDHFIKEYKGKH
KDCDIDKFKLLLGVEGYLVDDFVKIVTNNKGQELKGVPAVVFDIETTGLSPTEDKIIEIG
AVKMLDGVVVDKFSEFVDPKIPISPATTKLTTITDDMVIGAPLIDAVVPKFVEFCGDCVL
VGHNVGFDISFIIENCRRLGIKKEFTCIDTMGLSRAFYPQQAKHSLEAVCKTLKVVNEQH
HRAISDAECTAEIFKIFQEKLYEKGIYDLDAIKAIEELDIEAVKRLHSNHVILIAKDTCG
RTNLYTLISKSHIDYYYRKPIIPKSELIKYREGLIVGSACCLGELYEAVREGRSDEEIAK
IVDFYDYLEIQPIANNKFMIANEKMEKINSEEDLRDINRKIVKLGEHYNKPVVATCDVHF
LNPEDEIYRTIILSMKKMDKEDPAPLYLRTTEEMLQEFEYLGEEKAREVVIENSNKIFDW
CEKISPVRPDKCPPVIENSDELLRKICYDKMHEMYGDPLPPIVEERLEKELKSIIGNGYA
VLYIIAQKLVWKSLEDGYLVGSRGSVGSSFVAYAAGITEVNSLAPHYLCPECQYSEFDSE
DVKKYAGNSGCDMPDKRCPRCGALMKKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKA
HKYTEVIFGDGQTFRAGTIQSVADKTAYGYVKKYFEQAEKTKRSAEIERLAEGCKGVRRG
TGQHPGGIVVLPVGENIYSFTPIQHPANDMDTPIITTHFDYHKIDHNLLKLDILGHDDPT
MIRFLNDCTGLDPKDVPLDDRLVMTLFMNTTALGITPEQISGTKLGCLGLPEFGTDFAMN
MVIDAKPQSFSDLIRISGLSHGTGVWLGNAKDLIDSGAATLSSCICCRDDIMVYLIHKGL
DPSESFKIMEAVRKGKVAKGKENNWPNWEQDMMDKGVPEWYMGSCKKIEYMFPKAHAAAY
VMMAWRIAYFKIYIPQAFYAAWFSIRAKALNYERMFQGKATLKRYMEEYRKKGDALTAVE
EDELMAMRLAEEMYERGIEVEPIDIYKAESRTFKVVGDKIMPSLVSLERLGEKAADQIVE
AAKEGPFTSRDDFKSRTKCPQVVVDNMTRLGLLGNLPESSQLSIFDLMGK
NT seq 4473 nt   +upstreamnt  +downstreamnt
atgaacagaatgttttttgaagcatttcccatgcttaaggtcgatgatgatattttcaat
gatatgaaaagtgttgagattgagaagatttcatcaactaagaagcatgattttatacgt
atttacatcaaaagcagcatattaatcgaaaaaagtacaatttataagattgaaaagtct
attcaagaccagcttttttctggggttaacgttacggtgaaagtatatgaaaaatttaca
ctgtcttcacaatatacgcctaaatatctcatggatttttattcggagagtatctttctg
gaattcaagaattatgatccaattgagcataccatcataaaaagggctacttttgagtat
ccagatgattctaatgtgaacatatgtcttgaagaaaacgtgattactaggaaaaaggct
caggatataaagcgcgtatttgaaaagatttttaatgagcgttgcggattgaatgtcaat
tttaatattacatacagggaggcggtagaaagaactaagcctcaatatacatacgatgca
gtccatatagaaaaaggacctgagattgtagaggttgatgctatcaaggttgttgaatcc
agatctgaaaaggtagaaaaaaagcaggatagtaattggagcaatgaaaagtcaaagcag
gatatcaagaaaggtgcgacttttgctaaaggaaagttttcaaaaataccagatgatcca
tcaataatctatggcagaaactttgatgaagaaattacgcagattatcgatatcgagggg
gctataggtgaaattgttgttcgtggacagattattaagtatgaacgtaaagacataaaa
aatgaaaaagctattctgatgtttgccattactgactttacggacagcatcaaagttaag
atatttgccaaacaggagcaagtagcaaaacttgaggaaaaaatccatgtgggtgctttc
ataaagttaaaaggaatagctgcacttgataattttgaccatgaagtttccatccagagc
gttgtgggaatcaaagaaattcctgattttacgacgaagagagtcgataatgccccaaga
aaaagagtagagctacattgtcatacaaaaatgagtgatatggatgcggtttctagtgcc
gaagatatcattttgcaggcatacaagtggggaatgcctggtatagcgatcaccgatcac
gcagttgttcaaggactgacagaaggggatcactttataaaagaatacaaaggaaagcat
aaagactgtgatattgataagtttaagcttttgctaggtgttgaaggctatttggttgat
gactttgtaaagattgttactaataacaagggtcaggagttaaaaggagttccagctgta
gtttttgatattgagacaacaggtctttcacctacagaggacaagataatagagattggt
gcagtaaaaatgttggatggtgtagtagtggacaaattctctgagtttgtagatccaaag
attccgatatctccagctaccactaaactgacgaccattacagatgacatggttataggt
gcacctttgattgatgctgttgtcccaaagtttgtagagttttgcggagattgtgttctt
gtaggacataatgttggttttgatatcagcttcattatagagaattgtaggcgactgggc
ataaaaaaggaattcacctgcatagatacaatgggattatcaagagctttttacccacaa
caggcaaagcatagtcttgaagcagtgtgtaaaaccttaaaggttgttaatgagcaacat
catagggcgatttctgacgcggaatgtactgcagagatttttaaaatcttccaggagaaa
ttgtacgaaaaaggtatttatgatcttgatgctattaaggctatcgaagaactggatata
gaagctgtcaagagacttcacagtaatcatgtaattctgatagcaaaagatacttgtgga
agaactaatctctatacattaatcagcaagtctcatattgattactattataggaagcca
attatcccaaagagtgaattgatcaagtatagggagggattgattgttggatcagcatgc
tgtttaggagagctttatgaagctgttagagaaggccggtcggatgaagagatagcaaag
atagtagacttctatgactatttggagattcaaccaatagcaaataataaattcatgata
gccaatgaaaaaatggaaaaaatcaattccgaagaagacttaagggatatcaaccgaaag
atagttaaattaggagagcattataacaaacccgtagtcgccacatgtgacgtgcacttc
ttaaaccctgaagacgagatttataggacaattattctttccatgaagaagatggacaaa
gaagatccagcacctttgtatctcagaactacagaggaaatgcttcaggagtttgaatat
cttggtgaagagaaagcgagagaggtggttattgagaattcaaataagatatttgattgg
tgtgaaaagatatcgcctgtaagaccagataaatgcccaccggtaatagagaatagcgat
gaactacttagaaagatttgctacgacaagatgcatgagatgtatggagatccacttcct
ccgatagtagaagagcgtttggaaaaagagctcaagtcaatcatagggaatggttacgca
gttctttatatcattgcacagaaactagtgtggaagtccttggaggatggatatcttgta
ggatcaaggggatctgtaggttcatcgtttgtggcgtatgcagctggcataacagaagtc
aactccctggctccgcattatctgtgtcctgagtgccaatacagtgaatttgacagtgaa
gatgtaaaaaaatatgcaggaaattccggatgtgatatgcctgacaaaagatgtccgcgc
tgcggtgcgctgatgaagaaagatggttttgatatccctttcgaaacatttctaggattc
aagggagacaaggaaccagatattgaccttaacttttccggagaataccagtcgaaagct
cataaatatacggaagttatcttcggagatggtcagacattcagagctggaacaatccaa
tctgtggcagataagactgcctatggttatgtgaaaaagtattttgagcaagcagaaaag
actaagagaagtgctgaaattgagaggctagcagagggctgcaaaggtgtgcgacgtgga
actggacagcatccgggcggaatcgttgttcttcctgtcggagaaaacatttacagtttt
actccaatacaacatccagctaatgatatggacactcccatcataacgacacattttgat
taccataaaatagatcataacctgcttaaactcgacattctagggcatgatgaccctaca
atgatcagatttttgaacgattgcactgggcttgatcctaaagatgtaccacttgatgac
aggttagtaatgactttattcatgaatactacggctcttggcattacaccggaacagata
agcggtacgaagctaggatgcttgggattgccagaatttggtacagattttgccatgaac
atggtaatcgatgccaaaccacagtctttctctgatctcataagaatatctggtctttca
catggcactggcgtatggcttggaaatgctaaagatcttatagattcaggagctgccact
ctaagttcgtgcatttgctgtcgtgatgacattatggtttatcttatccataaaggcctt
gatccgtcagagtcttttaaaatcatggaggcagtgcgtaaaggaaaggtagcaaaagga
aaagaaaataactggcccaactgggaacaagacatgatggataaaggcgtccctgagtgg
tacatgggctcatgcaaaaagattgagtacatgtttcccaaagctcatgctgcagcttac
gtaatgatggcttggagaatcgcttatttcaagatttatattccacaagctttttatgct
gcgtggttttctatcagggctaaagctctcaactatgaaaggatgttccagggtaaagcc
actttgaaaaggtacatggaagaatataggaaaaaaggtgatgctcttacagctgtagaa
gaagatgagctaatggcgatgaggctggctgaagaaatgtacgaaagaggtatagaagtt
gagcctatagacatttacaaagcggaatccagaaccttcaaagttgttggcgataagatt
atgcctagtctcgtaagtttggaaagattaggagagaaggctgcggatcagatagttgag
gctgcgaaggaaggaccatttacttcaagggatgattttaaatcaagaaccaagtgtccg
caggttgttgtggacaatatgacaaggcttggccttcttggcaatcttcctgagtcgagc
cagctaagcatctttgatctgatggggaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (57)   

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