KEGG   Bordetella pertussis Tohama I: BP0864
Entry
BP0864            CDS       T00139                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bpe  Bordetella pertussis Tohama I
Pathway
bpe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bpe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BP0864 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpe03400]
    BP0864 (mfd)
Enzymes [BR:bpe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BP0864 (mfd)
DNA repair and recombination proteins [BR:bpe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BP0864 (mfd)
SSDB
Motif
Pfam: TRCF DEAD Helicase_C UvrB_inter CarD_TRCF_RID MFD_D3 ResIII Glyco_tran_WecG SNF2-rel_dom UB2H AAA_30 ELP6 ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: CAE41167
UniProt: Q7VZN3
Position
complement(896909..900340)
AA seq 1143 aa
MPIPATATTLSALKPGARFTQPRPPGSGDGWLLADLARQAGKPLVVLTADPLEAQRLADE
IPQFAPELRVRQLPDWETLPYDAFSPHQDLISQRLRTLHALMNQGVDILTVPVTTALYRL
APPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSHVTQVTAPGEFCLRGGLIDLFPMGSV
VPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQLLPGREFPMDEEARNRFRARFREVFEG
DPSRALPYKDIGNGIAFAGIEYYLPLFFEQTATLFDYLAADTITVTVGDIDDAMQRFAHD
TRSRYDFLKVDRERPVLPPDTLFLDHEALFARLKDFPRLALMAERPHPDFAAAPDVAVAR
RADDPVARLRALLAQTGDRVLLCADSAGRRETLAQMLGEHGLAPEAQADSIQAFLDDGAR
FGLAVAPLSAGFCVPGGALLFLTENDLYPGHAGVTRRGKRTQERTSNVEAMVRDLAELRA
GDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYASGSTLYVPVSQLHVIARYSGADPDA
APLHQLGSGQWDKARRKAARQVRDTAAELLALYAQRAAREGYAFKLPMSDYEAFAEGFGF
EETPDQAAAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPTT
LLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKDVR
FKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATA
PQKRLAIKTFVRREDGSTIREALLRELKRGGQVYFLHNEVETIHNRRARLEELVPEARIA
VAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPTANTIVIHRADRFGLAQLHQL
RGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEIL
GDSQSGNIQEVGFSMYNEMLNEAVRALKAGEEPDLDAPFNLACEVNLHAPALLPSDYCPD
VHGRLAIYKRLSHADGEDDLIRIQEELIDRFGKLPEAAQTLLATHRLRLAAQPLGIVKID
ASETQALLQFGAKTTVDPLRIIELVQRQRHIKLSGQDKLRVEIKAPQIAARADAVRAVLR
ALK
NT seq 3432 nt   +upstreamnt  +downstreamnt
gtgcccatccccgccaccgccaccaccctgtccgccctcaagccgggagcgcgctttacg
cagccccgcccgcccggatccggcgacggatggctgctggcggacctggcgcgccaggcc
ggcaagccgctggtggtgctgacggccgacccgctggaggcccagcggctggccgatgaa
atcccgcaattcgcgcccgaactgcgcgtgcgccagttgcccgactgggaaaccctgccc
tacgacgcgttctcgccccaccaggacctgatctcgcaacgcctgcgcacgctgcacgcg
ctcatgaaccagggcgtggacatcctgaccgtgccggtcaccaccgccctgtaccgcctg
gcgccgcccgccttcctggccgcgtatacgttttcgttcaagcagaaggaccggctcgac
gaagcggccctgcgcgcgcagctgacgctggccaactacagccacgttacccaggtcacc
gcgccgggcgaattctgcctgcgcggcggcctgatcgacctgtttcccatgggttcggtg
gtgccctaccggctggacctgttcgacgacgagatcgaatcgatccgcagcttcgacgtc
gacacgcagcgcagcctgtatccggtgggcgaagtgcagttgctgcccggccgcgagttt
cccatggacgaagaggcgcgcaaccgcttccgggcgcggtttcgcgaagtgttcgaaggc
gacccctcccgcgccctgccgtacaaggacatcggcaacggcatcgcgttcgccggcatc
gagtattacctgcccctgttcttcgagcagaccgccaccctgttcgattacctggcggcc
gacacgatcaccgtcacggtgggcgacatcgacgacgccatgcagcgcttcgcccatgac
acccgcagccgctacgactttctcaaggtcgaccgcgaacggccggtgctgccgccggac
accctgttcctcgaccacgaggcgctgttcgcgcgcctgaaagacttcccgcgcctggcc
ttgatggcggagcggccgcatccggacttcgccgccgcgcccgatgtcgccgtggcgcgc
cgcgccgacgaccccgtggcgcgcctgcgcgcgctgctggcgcagaccggcgaccgcgtg
ctgctgtgcgccgattcggccggccggcgcgagacgctggcgcaaatgctgggcgaacac
ggcctggcgcccgaggcgcaggccgattcgatccaggccttcctggacgacggcgcgcgc
ttcggcctggccgtggcgccgctgtcggccggcttctgcgttcccggcggcgccctgctg
ttcctgaccgagaacgacctctaccccggccatgccggcgtcacccggcgcggcaagcgc
acccaggaacgcaccagcaatgtcgaagccatggtgcgcgacctggccgaactgcgcgcc
ggcgacccggtggtgcacgcccagcacggcatcggccgctaccacgggctggtcaacatg
gacatgggcgaaggcgagatggagttcctgcatctcgaatacgccagcggcagcacgctg
tacgtgcccgtgtcgcagctgcacgtcatcgcccgctacagcggcgccgacccggacgcc
gcccccctgcaccagctcggttcgggccaatgggacaaggcgcgccgcaaggcggccagg
caggtgcgcgacaccgcggccgaactgctggccctgtatgcgcagcgcgccgcccgcgaa
ggctatgccttcaagctgcccatgagcgactacgaagccttcgccgaaggtttcggcttc
gaggagacgcccgaccaggcggccgccatccaggccgtcatcatggacatgacctcgggc
cgccccatggaccggctggtatgcggcgacgtgggcttcggcaagaccgaggtcgcgctg
cgcgccgccttcctggccgtggccaacggcaagcaggtcgcgctgctgtgccccaccacc
ctgctggccgagcagcatgcccagacgttttccgaccgcttcgccgactggccggtgcgc
gtcgtggagctgtcgcgctttcgctccgccaaggaggtggccgccgccgtcgaaggcatc
aacgacggccgcgtggacatcgtcatcggcacgcacaagatcctgtccaaggacgtgcgc
ttcaagcggctgggcctggtcatcatcgacgaggaacaccgctttggcgtgcgccagaag
gaaaccctcaaggcgctgcgcgccgaggtcgacgtgctgaccctgacggccaccccgatc
ccgcgcacgctgggcatgtcgctggaaggcatccgcgacttctccgtgatcgcgacggcg
ccgcagaagcggctggccatcaagaccttcgtgcggcgcgaggacggcagcaccatacgc
gaagcgctgctgcgcgagctcaagcgcggcggccaggtgtatttcctgcacaacgaggtc
gagaccatccacaaccggcgggcgcgcctcgaagaactggtgcccgaggcccgcatcgcg
gtcgcccacggccagatgcccgaacgcgagctggaacaggtcatgaagggcttctaccag
cagcgccacaacgtgctgctgtgcaccaccatcatcgaaaccggcatcgacatccccacc
gcaaacaccatcgtcatccaccgcgccgaccgcttcggcctggcgcagctgcaccagctg
cgcggccgcgtcggacgctcgcaccaccaggcctacgcctatctgctgacgccgggcgag
gatgccatcacgaacaacgccaagaagcgcctggaggccatccaggccatggaagagctc
ggttcgggcttctacctggccatgcacgacctggaaatccgcggcaccggcgaaatcctg
ggtgactcgcaatcgggcaacatccaagaggtgggcttctcgatgtacaacgagatgctc
aacgaagcggtgcgggcgctgaaggcgggcgaggagcccgacctggacgcgcccttcaac
ctggcctgcgaagtcaacctgcacgcgccggcgctgctgccgtcggactactgtcccgac
gtgcatggccgcctggccatctacaagcgcctgtcgcatgccgacggcgaagacgacctg
atccgcatccaggaagaactcatcgaccgtttcggtaaactgcccgaagccgcgcagacg
ttgctggccacgcaccgcctgcgcctggccgcgcaaccgctgggcatcgtcaagatcgat
gccagcgaaacgcaggccctgctgcagttcggtgccaagaccacggtcgaccccttgcgc
atcatcgagctggtgcagcgccagcgccatatcaagctgtccggccaggacaaactgcgg
gtggagatcaaggcgcctcagatcgccgcccgcgccgacgccgtgcgcgccgtcctgcgc
gcactgaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (36)   

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