KEGG   Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110162078
Entry
110162078         CDS       T05002                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpec00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110162078
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpec03019]
    110162078
Enzymes [BR:bpec01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     110162078
Messenger RNA biogenesis [BR:bpec03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110162078
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     110162078
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 type_II_gspD_N0
Other DBs
NCBI-GeneID: 110162078
NCBI-ProteinID: XP_020782609
Position
Unknown
AA seq 545 aa
MPKEKYEPPDPRRCYSIMAADEVASGKKSQWAELEISGRVRSLSSSLWTFTHLTALHIQD
NNLSRLPPDIARLPHLLYLNLSSNKLRSLPAEMGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLRDRDQINS
TAVFSVMCYNVLCDKYATRQLYGYCPSWALSWEYRKKGIMEEITHCDADIISLQEVETEQ
YYTFFLETLKDRGYDGYFCPKSRAKLVSEPERKHVDGCAVFFKTDKFTLVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVKKEVFSSGLKPSTERQLILVANAHMHWDPEF
SDVKLIQTMMFLSELKSIRERASATSDPSATPDPSAIPIVLCADLNSLPDSGVVEYLSNG
GVAENHKDFKELRYNECLSNFSCNGTGGDGSITHSFQLKSAYESMMPYTNYTYDFKGVID
YIFISRPLLSVLGLLGPLDSQWLLDNNILGCPHPHIPSDHFCLLAQLELRRPLPSSSING
IHAHR
NT seq 1638 nt   +upstreamnt  +downstreamnt
atgccaaaggaaaaatatgagcctcccgacccgcgcaggtgttactccatcatggcggcc
gacgaagtggccagtggcaaaaagtcccagtgggcggagctggagatctccggtcgcgtt
cgcagtctgagcagctctctctggaccttcactcacctcacggcgctccacatccaggac
aacaatctgagccgcctgccccctgacatcgcgcgcctgccgcacctgctctacctgaac
ctgtcgtccaacaagctccgcagcctgcccgccgagatgggcaacatggtgtctctcagg
gaattgcttttaaacaacaatcttctacgagtcctgccttatgaactcgggaggcttttc
cagctccagactctcggactcaaaggtaaccctctgtcccaggacattttaaacctttac
caggagccggacggtaccaggaaactgctcaactacatgctggacaacctggcagtccac
ccggagcagctcccacagaggccctggatcaccctgagagaccgggaccagatcaactcc
acagcggtgttctccgtcatgtgttataacgtgctgtgtgataaatacgccacgcggcag
ctctacggctactgcccgtcctgggccctgagctgggagtacaggaagaagggcatcatg
gaggagatcacccactgtgacgcagacatcatcagtctgcaggaggtagagacggagcag
tactacacgttcttcctggagaccctgaaggatcgtgggtatgacggatacttctgccca
aagtctcgagccaaactggtgtcagagccggagcgcaagcacgtggacggctgtgcggtc
ttcttcaagactgacaagttcacgctggtgcagaaacacactgtggagtttaatcaggtt
gccatggcaaactcggaggggtcagaggtcatgctgaacagggtcatgaccaaagacaac
atcggggtggccgtgctgctggaggtgaagaaggaggtgttctcctcaggtctgaagccg
tccaccgagaggcagctgatcctggtggccaacgctcacatgcactgggaccccgagttc
tccgacgtgaaactcatccagaccatgatgttcctgtccgagctcaagagcatccgggag
cgcgcctctgcgacctctgacccctccgccacccccgacccctccgccatccccatcgtg
ctctgcgccgacctcaactcactgccagactcaggtgtggtggagtacctgagtaacgga
ggcgtcgcagagaaccacaaagactttaaggagctgcgctacaacgagtgtctgtccaac
ttcagctgtaacgggacgggcggagacgggagcatcacccacagcttccagctcaagagc
gcctatgagagcatgatgccctacaccaactacacatacgacttcaagggtgtgatcgat
tacatcttcatctctcggcccctgctctctgtgctcgggctcctggggcccctggactct
cagtggcttctggacaataacatcctgggctgccctcacccgcacatcccctccgaccac
ttctgtctgctggcccagctggagctgcggcgccccctcccctcctccagcatcaacggc
atccacgcgcacaggtag

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