KEGG   Bordetella pertussis 137: Q425_6960
Entry
Q425_6960         CDS       T03754                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
bpeu  Bordetella pertussis 137
Pathway
bpeu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpeu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Q425_6960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpeu03019]
    Q425_6960
   03400 DNA repair and recombination proteins [BR:bpeu03400]
    Q425_6960
Enzymes [BR:bpeu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Q425_6960
Messenger RNA biogenesis [BR:bpeu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Q425_6960
DNA repair and recombination proteins [BR:bpeu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Q425_6960
SSDB
Motif
Pfam: RQC HRDC DEAD RecQ_Zn_bind Helicase_C
Other DBs
NCBI-ProteinID: AJB25509
Position
complement(692894..694714)
AA seq 606 aa
MSDPRALGVLARVFGYESFRGDQQAIVEHVIGGGDALVLMPTGGGKSLCYQVPALVREGT
GIVVSPLIALMQDQVDALTELGVRAAFLNATQDWRVAREVEQAFLAGELDLLYVAPERLL
TDRCLQLLERGRIALFAIDEAHCVSQWGHDFRPEYLGLSMLHERWPEVPRIALTATATAA
TRSEIAQRLALDEARHFVASFDRPNIRYRIVEKNEVRRQLLDLIRSEHEGESGVVYGLSR
ARVEETADFLCANGVNALPYHAGLSPAVRAANQARFLREDGIVMVATIAFGMGIDKPDVR
FVAHIDLPKSVEGYYQETGRAGRDGLPASAWLAYGLQDVVQQRRMIDESPGDDAYRRRLG
QQLDAMLGLCETVECRRVRLLAYFGQTITACGNCDVCLEPPQAWDGTVAAQKVLSAVYRL
WKERGQRYGAGHIIDILRGKSTDRTRQHDHETLSVFGVGADLSENAWRGVLRQLLAQGLL
AVDHEGFGTLALTEGSRAVLKGEHQLMLRREAEKKPRSSRAGARARPDPIDLPAEAKPVF
ESLRSWRGEVAKSNGVPAYVIFHDATLREIALARPESLDDLSHISGVGARKLQAYGEEIL
RCVQRP
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgtctgacccgcgcgccctgggcgtgcttgcgcgcgttttcggttacgaatccttccgt
ggcgaccagcaagccatcgtcgagcacgtcatcggcggcggcgacgcgctggtgctgatg
cctaccggcggcggcaagtcgttgtgctaccaggtgcccgcgctggtgcgcgaaggcacc
ggtatcgtggtttcccccctgatcgccctgatgcaggaccaggtcgacgccctgaccgaa
ctgggggtgcgggccgcgtttctcaatgccacccaggattggcgcgtggcgcgcgaggtc
gagcaggcattcctggccggcgagctggacctgctctacgtggcgccggagcgcctgctg
accgaccgctgcctgcaattgctcgagcgcgggcgcatcgccctgttcgccatcgacgag
gcgcactgcgtctcgcaatgggggcatgatttccggcccgaatacctcgggctgtcgatg
ctgcacgagcgctggcccgaggtgccgcgcatcgcgctgacggccaccgccaccgcggcc
acgcgcagcgagatcgcgcagcgcctggccctggacgaagcccgccatttcgtggccagc
ttcgaccgtcccaatatccgctaccgcatcgtcgagaagaacgaagtgcggcgccagctg
ctggatctcatccgcagcgagcacgaaggcgaatcgggcgtggtgtacggcctgtcgcgc
gcccgcgtcgaggaaaccgccgacttcctgtgcgccaatggcgtcaacgccttgccctac
catgccggtctgagcccggcggtgcgcgccgccaaccaggcgcgcttcctgcgcgaggat
ggcatcgtcatggtggccaccatcgccttcggcatgggcatcgacaagcccgacgtgcgt
ttcgtggcgcacatcgacctgcccaagtcggtcgaaggctactaccaggaaaccggccgg
gccggccgcgacgggctgccggcctcggcgtggctggcctatggcctgcaggacgtggtg
cagcaacgccgcatgatcgacgagtcgcccggcgacgatgcctaccggcgccggctcggc
cagcagctcgatgccatgctgggcctgtgcgaaaccgtcgaatgccggcgcgtgcgcctg
ctggcttacttcgggcagaccatcacggcttgcggcaactgcgacgtctgcctcgaaccg
ccgcaggcctgggacggcacggtcgccgcgcagaaagtgctgtcggccgtgtaccgcctg
tggaaggagcgcggccagcgctacggcgccggccatatcatcgatatcctgcgcggcaag
agcaccgaccgcacgcgccagcacgaccacgaaaccctgagcgtattcggcgtgggcgcc
gacctgtccgagaatgcctggcgcggcgtgctgcgccagctgctggcccagggcctgctg
gcggtcgatcacgagggtttcggcaccctggcgctgaccgagggcagccgcgccgtgctc
aagggcgagcatcagctcatgctgcgccgcgaggccgagaaaaagccgcgcagctcgcgc
gcgggcgcccgcgcgcggcccgaccccatcgacctgccggccgaggccaagccggtgttc
gagtcgctgcgcagctggcgcggcgaggttgccaagagcaacggggtgccggcctatgtg
atcttccacgatgccaccctgcgcgagatcgcgctggcccggccggagtcgctggacgat
ctcagccacatcagcggcgtgggggcgcgcaagctgcaagcctacggcgaggaaatcctg
cgctgcgtgcagcgcccgtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system