KEGG   Alkalihalophilus pseudofirmus: BpOF4_08245
Entry
BpOF4_08245       CDS       T01165                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (TRCF)
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bpf  Alkalihalophilus pseudofirmus
Pathway
bpf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bpf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BpOF4_08245 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpf03400]
    BpOF4_08245 (mfd)
Enzymes [BR:bpf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BpOF4_08245 (mfd)
DNA repair and recombination proteins [BR:bpf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BpOF4_08245 (mfd)
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter CarD_TRCF_RID Helicase_C ResIII MFD_D3 AAA_30 RecG_dom3_C CdvA
Other DBs
NCBI-ProteinID: ADC49707
UniProt: D3FR11
Position
66317..69859
AA seq 1180 aa
MLGLQKYFLVNDEVKAVSSSVEAGMKEQLLSGLTGSSRTLLMAALYKETKKTQVVITHNL
FQAQKVYEDLIDLVGEEDVHLYPVNELISSEIAIASPEMKSQRLDVLNKLVAGFEGIIIV
PLAGIRRLLPPTYLWKDSQLNISVGRDIGEIHNVITKLVMMGFERVDMVSSPGEFSVRGG
IIDIYPLTESNPIRVELFDTEIDSIRTFLIETQRSEKELKEITIGPAEEVILQDQHYQHA
ANRLQEQLSATLKKVKAKQTKEKLSQNISYEIGQLKQRSSFQGMYKYMSFYYEVKSTLLS
YLPDDALIIIDEMSRVKEMADNLEKEEAEWSTALLAQGETVHEATMSLDALEGMKKSSHS
IVYLSLFLKHIPSTSPENVVNFTCKSMQNFHGQMQLLQSEVKRWQKSGYAIVFLAGTKER
AQRLALNLDEEGIDAHVVERATELTENTVHLMVGQLNSGFELPSHKLVVITEEEVYAKQK
KRVQRNKQKLSNAERIKSYSELKVGDLVVHTNHGIGKYLGVETLEINGLHKDYLHLRYAG
DDKLYVPVEQIDQVQKYVGSEEKDPKIYALGGNDWKKVKKRVQSSVEDIADDLIKLYAER
EASKGYAYSKDGAEQADFEGTFPYQETEDQIRAVEEIKEDMEKERPMDRLLCGDVGYGKT
EVAIRAAFKAIMDGKQVAILVPTTILAQQHYETIKERFSDFPINIGVLSRFRSRKEQTET
LKGLKAGSVDLIVGTHRLLSKDIVFKDLGLLIVDEEQRFGVTHKEKIKQLKANIDVLTLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNASLIREAIERELTRGGQVYFL
YNRVEDIERMTEQISMLVPDAKVSFAHGQMNERELESIMLDFLEGNSDVLVTTTIIETGV
DIPNVNTLIINDADKMGLSQLYQIRGRVGRSNRVAYAYFTYQRDKVLTEVAEKRLQAIKE
FTELGSGFKIAMRDLTIRGAGNLLGAQQHGFIESVGFDLYSQMLKEAIEERKGDKPKEPP
FQVEMDIKVDAYIPESYIQDAKQKIEMYKRFKGCETIEDLADLKDEMFDRFGEYPKQVEY
LLRLTEIKLRATKERVESIVEAKNQIDILFSPETSKEMDGAMLFEMAHSLGREVTLGTSG
EKIKFVIKTKNIDDEKLISKVESILQSIPKSRKQTTSNTV
NT seq 3543 nt   +upstreamnt  +downstreamnt
atgttaggattgcaaaagtattttctagtaaatgatgaggttaaagcggtttcatctagt
gttgaagctggaatgaaagagcagctgctctcaggcttaacaggttctagccggacgctg
ttaatggctgctttatacaaggaaacgaaaaagacgcaagtagtcattactcataatctt
tttcaagcacagaaggtgtatgaggatttaattgacttagtaggagaagaggacgttcat
ctttatccagttaatgagcttatttcctcggaaattgccattgctagtcctgaaatgaaa
tcacagcgtttagacgtattaaataaattagtagctggctttgaagggattatcattgtt
cctttagcagggataagaaggttgctgcctccaacttacttatggaaggacagccaatta
aatatctctgtgggccgggatatcggcgagatccataatgtgattacaaaattggttatg
atggggtttgagcgtgtggatatggtgtcatctccaggagagttcagtgtgcgagggggc
attattgatatttatcctttaactgaatcaaaccctatccgtgtcgaattatttgatact
gaaattgattcaatcagaacgtttcttattgaaacgcaacgctctgaaaaagaattgaaa
gaaatcaccatcgggccagccgaagaggttattttacaagatcagcattaccaacacgca
gctaacaggctccaagaacagctgtcagctaccttaaagaaagtaaaagctaaacaaact
aaagaaaagctgtctcaaaatatttcttatgaaattggtcagctcaaacagcgctcgagc
ttccaaggtatgtataaatacatgtctttttactatgaggtaaagagtacgttactctct
tatctgccagatgatgcattgattattattgatgagatgagccgggttaaagagatggca
gacaacttagagaaagaagaagcagaatggagcacggccctcctagcgcagggagagaca
gtacatgaagcaacgatgtcactagatgcactagagggtatgaaaaagtcttctcattcg
attgtttatttatcgttattcttaaagcacattccatcaacgagcccagaaaatgtggtg
aatttcacgtgtaaatcgatgcaaaactttcatgggcaaatgcagcttctgcaatcagaa
gtaaagcgctggcaaaaatccggctatgcgattgtatttttagcgggcactaaagagcgt
gcgcaacgacttgcattaaacttagatgaagaaggcatagacgctcatgtagtagagagg
gcgacggagcttactgaaaatacggttcacttaatggttggccagttaaacagtggtttt
gagctgccgtctcataagcttgtcgtcattactgaggaagaagtatacgccaagcagaaa
aaacgtgtacagcgtaataagcaaaagttatcaaatgcagagcgtattaaaagctactcc
gaattaaaggtcggagatttagtcgttcatacgaaccacgggatcggtaaatatttaggt
gttgaaacgcttgaaatcaacggcctgcacaaagactatctgcacttgcgttacgctggt
gatgataaactttacgtacctgttgagcaaattgatcaagtgcaaaagtatgtagggtca
gaagaaaaagatcctaaaatttatgcactgggcggaaatgactggaagaaagtgaagaag
cgagttcaatcttcagtcgaagacatagcggatgatttaattaaattatatgctgaacgt
gaagcaagcaagggctatgcctactcaaaagacggggctgaacaagctgattttgaaggg
acatttccatatcaagaaacggaagatcaaatcagagcagtggaagaaattaaagaagat
atggaaaaagaaagaccgatggaccgcctgctgtgcggggatgtagggtatgggaagact
gaagttgctatacgagctgcttttaaagccattatggatggcaaacaggtagctatatta
gttcctaccaccattttagctcagcagcattacgaaacgattaaagaacgattttctgat
tttccaattaatattggagtccttagccgtttccgctcaagaaaagaacaaacagagacg
ctgaaaggcttgaaagcaggttctgttgatttaatcgttggtacacaccgtctgctttca
aaagatattgtttttaaagatctcggtcttctaattgttgatgaagaacagcgctttggg
gtcactcataaagaaaagattaaacaattgaaggcaaatattgatgttcttacattaaca
gccacacctataccgcgtacgctccatatgtccatgcttggagttcgtgatttatccgtt
attgagacaccgcctgagaaccgctttccggttcaaacgtatgtggtcgaatataatgcc
tcgcttatcagggaagccattgagcgtgaattaacgcgaggcggtcaagtgtatttcctc
tacaacagagttgaagatattgagcggatgacagaacagatctcgatgcttgttcctgat
gcaaaagtgtcgtttgcccacggtcagatgaatgaacgggaacttgagtctattatgctt
gatttcttagaaggaaacagcgatgttcttgtcacaaccacaattattgaaacgggagta
gatatcccaaatgtaaacacgctgatcatcaatgacgcagataaaatgggactttcacag
ctttatcaaattagagggcgggtaggacgttctaaccgagttgcttatgcgtattttacg
tatcagcgtgacaaagtgctgactgaggtcgctgaaaaaagactccaagccattaaagag
ttcacagaacttgggtcaggatttaaaattgccatgcgcgatttaacgatccgcggagct
ggtaacctgcttggtgcacagcagcatggctttattgaatcggtcgggtttgacttgtac
tctcaaatgcttaaagaagcgattgaagagcgtaaaggggataaaccgaaagagcctcca
ttccaagttgagatggatattaaagtggatgcttatataccagagagctatattcaagat
gctaagcagaaaattgaaatgtataaacgatttaaaggctgtgaaacaatagaagatctc
gctgatttaaaagatgaaatgtttgatcgtttcggcgaatatccaaagcaggttgagtat
ctcctgcgtctcacagaaatcaagctgcgtgccactaaggagcgagtcgaatcgattgta
gaagcgaaaaatcaaatcgatattttattctcgcctgaaacatcaaaagagatggacggg
gcgatgttatttgaaatggcgcattccttaggcagagaggtaactcttggtacgtctggt
gaaaaaattaaatttgtcattaaaacaaaaaatatcgacgatgaaaagctaatcagtaaa
gttgaatcaatcctgcaaagcattccaaagagcagaaagcaaacaacaagtaatacggtt
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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