KEGG T01165: BpOF4

Bacillus pseudofirmus: BpOF4_18445

Entry

BpOF4_18445 CDS T01165

Gene name

ligD

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

bpf Bacillus pseudofirmus

Pathway

bpf03410	Base excision repair
bpf03420	Nucleotide excision repair
bpf03430	Mismatch repair
bpf03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:bpf03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:bpf03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:bpf03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:bpf03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M mRNA_cap_enzyme

Other DBs

NCBI-GI:

288556687

NCBI-GeneID:

8768730

UniProt:

D3FS95

Position

2031734..2033470

AA seq 578 aa
MVWENETPQLYSRNEKELTANFPEIIEWCRSNYEQVKEYLPLILDGELVHLTNSYQSEFT
LVQQRGKLRTIESITRHSRLYPMNFIAFDLLKISGTSLMENPLFTRKKQLDKLCKVLGIT
KDTSPLQIIETFKKGEELFDFVTEHNGEGLVAKKKTSTYRSTRSKDWLKIKNWRYVQLIV
TAYDKGNGYFEGSVLKDGELTAVTHFKHGMKDEEYTTLTALFKENGEKRGKETWTLPPSI
VVNIASIGFDGKQLREPQFDSFLMDAEPDGCTWNSLQRQLHPIPKQVEITHPDKPVWPSI
HLVKDDYLLYLQKAAPFFLPFLQDRLLTVIRFPHGADDESFYQKNTPDYAPSFIQTAVDE
DIEYILCNDLKSLLWLGNQLALEFHIPYQTIHQTKPAELVFDLDPPSVDEFGLAVQAALQ
MKEIFDQFHLTSYVKTSGNKGLQLYLPLPEEAFSYKQTRAFSEFVSIYLCEQNPEIFTIE
RLKKNRGGRLYIDYIQHDAGKTIIAPYSTRGHRRGLVATPLYWDEVGDKLTPDDFTIPRV
IERLRSEGDPFRSIRENLDEQGEAFAAVLGELKKLGKK

NT seq 1737 nt +upstreamnt +downstreamnt
ttggtttgggaaaatgaaacgccgcagctttatagcaggaacgaaaaagaattaacagca
aactttccagaaatcattgagtggtgccgctcgaattatgagcaagttaaagaatatctg
cctcttatattagacggtgagttggttcaccttaccaactcctatcaaagtgaattcaca
ttagtgcagcagcgcggcaaactgcggacaatagaatccatcacccgacacagcaggctt
tacccaatgaattttatcgcatttgacctcctaaaaatcagcggcacatctcttatggag
aatccacttttcacacgaaaaaaacagttagataagctatgcaaagtattaggcataaca
aaagatacatctcctctgcagatcatcgaaacatttaagaaaggagaggaactctttgac
tttgttacagaacataatggcgagggtcttgtagcaaagaagaagacgagtacgtaccga
tctacccgctcaaaagactggttgaaaattaaaaactggcgctatgttcaattaatagtg
accgcctatgataaaggaaacggatattttgaaggcagcgttttaaaagatggtgagctg
actgctgtaactcattttaaacacggaatgaaggatgaggagtacacgactctaactgca
ttatttaaggaaaatggcgaaaaaagagggaaagaaacgtggaccctgccaccatctatc
gtggtgaatatagcttctatcggctttgatggaaaacagcttcgtgaacctcagtttgat
tcatttttgatggacgcagaaccggatggttgcacatggaattctctacaaagacagctc
caccctatccctaaacaagttgaaatcactcatcctgacaagccagtttggccatctatt
catctagtgaaagatgattatcttttgtatttgcaaaaagcagctccattcttccttccc
tttttacaagacagactgttaactgttatccggtttccacacggagcagatgatgagtca
ttttaccagaaaaacacgcctgattatgccccatcgttcattcaaacggcagtcgatgag
gatattgaatatatactttgcaatgaccttaaaagcttattgtggcttggtaatcaatta
gcacttgagtttcacatcccgtatcagacgattcatcaaaccaagcctgcagaattagta
tttgatcttgatccgcccagtgtagatgaatttggactagctgttcaagcagccttacag
atgaaggagatctttgatcagtttcatctcacctcttatgtgaaaacgtcagggaataaa
ggacttcagctttatctcccgctgccagaggaagcattttcatataagcaaactagagca
tttagtgagtttgtcagtatttatttatgcgaacaaaaccctgagatatttaccattgag
cggctgaagaaaaatcgtggcggtcgtttatacattgattacattcagcatgatgctgga
aaaacaatcattgctccgtactcaacgagagggcacagacgagggcttgttgccactccg
ctttattgggatgaggttggtgacaaacttacacctgatgactttacgattccacgagta
atcgagcggttacgttcggaaggtgatccattccgcagcatacgtgaaaatcttgatgag
caaggagaagcgtttgcggcagtgcttggagagttgaagaagctggggaagaaataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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