KEGG T00704: Bphy

Burkholderia phymatum: Bphy_0981

Entry

Bphy_0981 CDS T00704

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

bph Burkholderia phymatum

Pathway

bph03410	Base excision repair
bph03420	Nucleotide excision repair
bph03430	Mismatch repair
bph03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:bph03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:bph03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:bph03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:bph03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S MBF1

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1:1096745..1099609

AA seq 954 aa
MTDKLETYHRKRRFNETPEPSGVATRGNGRQAAKPAPPGKAARQHDLSFVIQEHDARRLH
YDFRLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPIEYGSFEGDIPEGNYGAGSVIVW
DRGTWEPVGGEAGARDAYAAGKLKFHLKGHKLHGGWTLVRSHMRGSGDKEQWLLIKERDD
EARSEADFDVLEQRQGSVLSDAPGARGGAKGAARPVAGKWKTREERANASVRASKAAASR
RAKGTPDDRPDIVATRNSQSLRELAQHPSIEGAVEAKLPAALKPQLATLVDSAPAGDDWL
YEIKFDGYRILARIDHASKEPVKIFTRAGNDWSAKFGKQVKAIARVGVGSAWLDGEAVVL
DSHGVPDFQALQNAFDANRPQDITLYLFDLPYLNGYDLRGVPLEQRRAILRALLDTVDDD
TLRFSSDFGFDADQLLKSACDMQLEGIIGKRRDSLYVSGRSPAWIKLKCRRRQEFVIGGY
TEPAGSREAFGALLLGVYDAKGQLQYAGRVGTGFDASRLRSIKKELDGRETATMPFASEP
RERSRTRVHWVKPELVAECNFAEWTSDGVVRQASFVSLRSDKPAQQIVHEAPRKGADVQH
IAEESGAGQTKTSTAKQRVSKMPDVRDAPKTTTKRAGASSTSVGSAAAKSSGKTGAATVS
GVRISHPDRVIDKSTGVRKLELAEYYASVATWMLPYLKDRPVALVRAPEDIGGELFFQKH
SQRLAIPNITQHPGLDPGHPPLLTIESEAALVGAAQMGTIELHTWNAVAANIEKPDRMVF
DLDPDPALGWKRMIEAAQLTRELLAELGLESFCKTSGGKGLHVVVPIAKQLGWDDVKVFS
QAVAQHMATALPKHFAAKMGAQNRKGKIFVDYLRNNRGSSTVCAYSLRARPGLGVSVPLT
WDEVPETTAGDQWNIANVHERLDALKRDPWADYAKTRQRITAAMRRRLDTAERD

NT seq 2865 nt +upstreamnt +downstreamnt
atgaccgacaagctcgagacctatcatcgcaagcgacgcttcaatgaaacgccagagccg
tcgggcgttgccacacgcggaaacggcaggcaggccgccaagccggcgcccccgggaaaa
gcagccaggcagcacgacctgtcgttcgtgatccaggagcacgacgcgcggcgtctgcac
tacgacttccgtctcgaactcgacggtaccttgaagtcatgggcggtgccgaaggggccg
agcctcgatccatcggtcaaacggctcgcggtgcatgtcgaagatcatcccatcgaatac
ggctcgttcgagggcgacattcccgagggtaattacggcgcgggttccgtgatcgtctgg
gatcgcggcacatgggaacccgtcggcggcgaagcgggcgcgcgcgacgcgtacgcggcg
ggcaagctcaagtttcatctgaagggtcacaagctgcacggcggctggacgctcgtgcgc
agccatatgcgcggcagcggcgacaaggagcaatggctgctcatcaaggagcgcgatgac
gaggcgcgcagcgaagccgacttcgacgtgctcgaacagcggcagggcagcgtgctgtcg
gatgcaccgggcgcgcgcggcggtgcaaaaggagcggcccgacccgtcgccggcaaatgg
aagaccagggaagagcgtgcgaacgcgtcggtcagggcgtcgaaggcggcggcgtcacgc
agggccaaaggcacgcccgacgatcgccccgacatcgtcgcgacgcgcaactcgcagtcg
ctgcgagaactcgcgcagcatccgtcgatcgaaggcgcggtcgaggcgaagctgcctgcc
gcgctcaagccgcagctcgcgacgctcgtcgacagcgcgccggccggcgacgactggctt
tacgagatcaagttcgacggctaccgcatcctggcgcgcatcgatcacgcatcgaaggag
cccgtgaagattttcacgcgtgcgggcaacgactggagcgcgaagttcggcaagcaggtg
aaggcgattgcgcgcgtcggtgtgggcagcgcgtggctcgacggcgaagcggtggtgctc
gacagccacggcgtgccggatttccaggcgctgcaaaatgccttcgatgcgaaccgtccg
caagacatcacgctctatctgttcgacttaccgtatctcaacggctacgacttgcgcggc
gtgccgctcgaacagcgtcgcgcgatcctgcgcgcgctgctcgacaccgtcgacgacgac
acattgcgcttctcgtccgacttcggcttcgacgccgatcagttgctgaagagcgcatgc
gacatgcagctggaaggcatcatcggcaagcgccgcgacagcctgtatgtgtcgggccgc
tcgcccgcgtggatcaagctcaagtgccggcgccggcaggagttcgtgatcggcggctat
acggaaccggcgggcagccgcgaggcgttcggcgcgctgctgctcggtgtatatgacgcg
aagggacagctgcaatacgcggggcgagtcggcacgggtttcgatgcaagccggttgcgc
tccatcaagaaggaactggacgggcgcgaaacggcgacgatgccgttcgcgagcgagccg
cgcgaacgaagccgcacgcgcgtgcattgggtgaagcccgaactcgtcgcagaatgcaac
ttcgcggaatggacgagcgacggcgtcgtgcggcaggcgtcgttcgtcagtctgcgcagc
gacaagcccgcgcaacagatcgtccatgaagcgccacgcaagggggctgacgtgcaacat
atcgcggaagaatcgggtgccgggcagacgaagacgtcgacggcgaaacagcgggtgtcg
aagatgccggatgttcgggacgcgcccaagaccacaacgaagcgcgcgggcgcgtcttca
accagcgtcggcagtgccgccgcgaaatcgtccggcaagacgggtgcggcgaccgtctct
ggcgtacgcatctcgcatcccgaccgcgtaatcgacaagagcaccggcgtgcgcaagctc
gaactcgctgaatactacgcatcggttgcgacgtggatgcttccgtatctgaaggaccgc
cccgttgcgctcgtgcgagcgccggaggacatcggcggcgagctgttcttccagaagcac
agccagaggctcgcgatcccgaacatcacgcagcatcccggactggaccccggtcatccg
ccgctgctgacgatcgagagcgaagcggcgctggtcggcgcagcgcagatgggcacgatc
gaactgcacacgtggaacgcggtggccgcgaacatcgagaagccggaccgcatggtgttc
gatctcgacccggacccggcgctcggctggaagcggatgatcgaagcagcgcagctcacg
cgcgagctgctcgccgaactaggccttgagtcgttttgcaagacgagcggcggcaagggg
ctgcacgtcgtcgtgccgatcgcgaagcagctgggctgggacgacgtgaaggtgttttcg
caagccgtcgcgcagcatatggcgaccgcgctgccgaaacacttcgctgcgaagatgggc
gcgcagaaccgcaagggcaagattttcgtcgactatctgcgcaacaaccgcggttcgagc
accgtctgcgcgtactcgctacgcgcgcgtcctggcctgggggtgtcggtaccgctcacg
tgggatgaagtgcccgagaccacggcaggcgatcaatggaacatcgcgaacgtccatgag
cggctcgacgcgctgaagcgcgatccgtgggccgattacgcgaagacccggcagcgcatc
acagccgccatgcggcgcaggctcgatacggcggaacgcgattga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-BPH (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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