KEGG   Burkholderia pseudomallei 1106a: BURPS1106A_1816
Entry
BURPS1106A_1816   CDS       T00480                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
bpl  Burkholderia pseudomallei 1106a
Pathway
bpl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BURPS1106A_1816 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpl03019]
    BURPS1106A_1816 (rnr)
   03016 Transfer RNA biogenesis [BR:bpl03016]
    BURPS1106A_1816 (rnr)
Enzymes [BR:bpl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BURPS1106A_1816 (rnr)
Messenger RNA biogenesis [BR:bpl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BURPS1106A_1816 (rnr)
Transfer RNA biogenesis [BR:bpl03016]
 Prokaryotic type
  tRNA degradation factors
   BURPS1106A_1816 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 RNase_II_C_S1 HTH_12 CSD RcsD_ABL
Other DBs
NCBI-ProteinID: ABN89360
UniProt: A3NUR2
Position
I:1778035..1780695
AA seq 886 aa
MCAAKTAIIDGQTNLSTFFRGPSASRRARRNTRRAARSPQRRVLEWGGMSGAPVRLRLPR
SRKPNATRKIIDKPLSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFR
RVAAMERDGQIRLDKRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNAEMQK
VMHNDRVLARIVGYDRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRISHDIL
VTQNAKKAKVGQVVVVELTDFPSRHSQPLGRVCEVLGDIDDPGMEIEIAVRKYGVPHEFG
AQALGEAAALPDKVRPADLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPAAVGRGEGFRL
IVAIADVSHYVQPGSPLDADAVERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLAC
DMIINARGDIKAYQFYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAELMPHLQHLYGVY
KALFVARQKRGAIDFDTTETYIVCNAQGKIEQILPRQRNDAHRLIEECMLAANVCAADFL
KRNKHPGLYRVHAGPTPEKLENLRAFLRDMGLTLGGGDTPHASDYAALMAHIRDRPDAQM
LQPMLLRSMQQAVYSPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPK
SPEGVELNTALSPRARAMQREDDEARGRARSNAAIWEELGLHCSSNERRADEASRDVEAW
LKCYFMRDKLGEEYGGMVNGVTSFGIFVQLDALFIEGLVHVTELGADYFQYDEVKNELRG
ERTGIRYRLSDRVRVQVSRVDLDARKIDFRLVRETPVKAPRPASAVAAEAGAGGPRVRAL
PPAEGAARRKKAASAPSAAVKEARAARKKGAASKPAAKKARSRKKY
NT seq 2661 nt   +upstreamnt  +downstreamnt
gtgtgtgctgcaaagaccgccattatagacggccaaacgaacctgtcaacattttttcga
gggccgtccgcatcgcggcgcgcgcggcgcaacacgcggcgtgcggcccgttcgccgcag
cggcgggtgttagaatggggcggcatgagcggcgcgcccgttcggctccgcttgccgcgg
tcgcgcaagccaaacgcaacgagaaaaatcatcgacaagcccttgagcaagtatccgtat
cccatcccgagccgcgaagagattctcggcgtgctgcgcacgagcgacgcgccgcttgcg
gcgaacgacatcgccgaagcgctgtcgatcaagcgtcaggagcgcgaaggatttttccgg
cgcgtcgccgcgatggagcgcgacggccagatccgtctcgacaagcgcggtcattatcag
ctgacgcatccgtccaacttcgtcgcgggccgcgtgcaaggccaccgcgacggctacggc
ttcgtgattcgcgacgacgggcaggatgatctgttcctgccgaacgccgagatgcaaaag
gtcatgcacaacgaccgcgtgctggcgcggatcgtcggctacgatcggcgcggccggccg
gaagggcacgtcgtcgaggtgaccgagcgggcgaacaagcgcgtgatcgggcgcctcctg
aacgagaacggcgcgctcatcgtcgcgcccgaggacaagcggatcagtcacgacatcctc
gtcacgcagaacgcgaagaaggcgaaggtcgggcaggtcgtcgtcgtcgagctcaccgat
ttcccgagccgtcattcgcagccgctcggccgcgtctgcgaggtgctcggcgatatcgac
gatcccggcatggagatcgagatcgcggtgcgcaagtacggcgtgccgcacgaattcggc
gcgcaagcgctcggcgaggccgcggcgctgccggacaaggtgcggcccgcggatctgcgc
taccgcgtcgacttgcgcgacgtgccgctcgtcacgatcgacggcgaggacgcgcgcgac
ttcgacgacgccgtgtactgcgagcccgccgcggtcggccgcggcgagggcttccggctc
atcgtcgcgatcgcggacgtgtcgcactacgtgcagccaggcagcccgctcgacgccgac
gcggtcgaacgcagcacgtcggtctatttcccgcgccgggtgattccgatgctgccggag
aagctgtcgaacgggctctgctcgctgaatccgcaggtcgatcgctgcgtgctcgcgtgc
gacatgatcatcaacgcgcgtggcgacatcaaggcgtatcagttctatccggccgtgatc
cactcggccgcgcggctcacgtacaccgaagtggccgcggtgctctcgaacacgaagggg
ccggaggccgcgcgccgcgccgagctgatgccgcacctgcagcacctgtacggcgtctac
aaggcgctcttcgtcgcgcggcagaagcgcggcgcgatcgacttcgacacgaccgagacg
tacatcgtctgcaacgcacagggcaagatcgagcagattctgccgcgccagcgtaacgac
gcgcatcggctgatcgaggaatgcatgcttgccgcgaacgtctgcgcggccgatttcctc
aagcgcaacaagcacccgggcctctaccgcgtgcacgcggggccgacgcccgaaaagctc
gagaatctgcgcgcgttcctgcgcgacatggggctcacgctgggcggcggcgacacgccg
cacgcgagcgattacgcggcgctgatggcgcacatccgcgaccggcccgacgcgcagatg
ctgcagccgatgctgctgcgctcgatgcagcaggcggtctacagtccggacaacatcggc
cacttcggtctcgcgtacgacgcgtacgcgcacttcacgagcccgattcgccgctatccc
gatctgctcacgcaccgcgcgatctacgcgatcctgtccggcaagaagtacacgccgaag
tcgccggaaggcgtcgagctgaacaccgcgctgtcgccgcgcgcgcgcgcgatgcagcgc
gaggacgacgaggcgcgcggccgcgcgcggtcgaacgcggcgatctgggaggagctcggg
ctgcactgttcgtccaacgagcggcgcgcggacgaagcgtcgcgcgacgtcgaggcatgg
ctcaagtgctatttcatgcgcgacaagctcggcgaggaatacggcgggatggtgaacggc
gtcacgtcgttcggcatcttcgtgcagctcgatgcgcttttcatcgaaggcctcgtgcat
gtgaccgagctcggcgccgattattttcagtacgacgaagtcaagaacgaactgcgcggc
gagcgcacgggcattcgctaccggctgtccgaccgcgtgcgcgtgcaggtgagccgcgtc
gatctcgatgcgcgcaagatcgatttccgcctcgtgcgcgagacgcccgtgaaggcgccg
cgcccggcatcggcggtggcggccgaagcgggcgcgggcgggccgcgcgtgcgcgcgctg
ccgcccgccgaaggcgccgcgcgacgcaagaaggccgcgagcgcgccgagcgcggcggtg
aaggaggcccgggcggcccgcaagaagggcgccgcgtcgaagccggccgcgaagaaggcg
cgttcgcgcaagaagtactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system